Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OMP06_RS17460 Genome accession   NZ_CP110462
Coordinates   3650854..3651348 (-) Length   164 a.a.
NCBI ID   WP_000993731.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain RBH2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3645854..3656348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMP06_RS17435 (OMP06_17435) - 3646781..3647164 (+) 384 WP_000090000.1 RidA family protein -
  OMP06_RS17440 (OMP06_17440) - 3647374..3647568 (+) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  OMP06_RS17445 (OMP06_17445) bfr 3647813..3648277 (+) 465 WP_000678123.1 bacterioferritin -
  OMP06_RS17450 (OMP06_17450) - 3648318..3649946 (-) 1629 WP_065086759.1 PglL family O-oligosaccharyltransferase -
  OMP06_RS17455 (OMP06_17455) tfpZ 3650044..3650778 (-) 735 WP_000166834.1 TfpX/TfpZ family type IV pilin accessory protein -
  OMP06_RS17460 (OMP06_17460) pilA 3650854..3651348 (-) 495 WP_000993731.1 pilin Machinery gene
  OMP06_RS17465 (OMP06_17465) - 3651693..3652253 (-) 561 WP_000258957.1 TPM domain-containing protein -
  OMP06_RS17470 (OMP06_17470) - 3652247..3653329 (-) 1083 WP_001246375.1 YgcG family protein -
  OMP06_RS17475 (OMP06_17475) - 3653351..3653941 (-) 591 WP_000846931.1 LemA family protein -
  OMP06_RS17480 (OMP06_17480) - 3654072..3654959 (-) 888 WP_001017320.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 16531.83 Da        Isoelectric Point: 7.7701

>NTDB_id=755018 OMP06_RS17460 WP_000993731.1 3650854..3651348(-) (pilA) [Acinetobacter baumannii strain RBH2]
MNAQKGFTLIELMIVVAIIGILAAVALPAYQDYTKRAKVTEGLSLAGSAKTAVAENAANAAQYDKGWTSPTATANVKSVA
IANATGVITITYDTPVSDAAANTLVLEPYTTDGAGKAAGLPDSTKAYTPPEAQIQWACLAAGATAKAGTTAGTLPSKLAP
SSCR

Nucleotide


Download         Length: 495 bp        

>NTDB_id=755018 OMP06_RS17460 WP_000993731.1 3650854..3651348(-) (pilA) [Acinetobacter baumannii strain RBH2]
ATGAATGCACAAAAAGGTTTTACGTTAATTGAACTCATGATCGTGGTTGCCATTATCGGTATCTTGGCAGCTGTTGCATT
ACCTGCATATCAAGATTACACCAAACGCGCAAAAGTAACAGAAGGGTTATCTTTAGCGGGAAGTGCTAAAACGGCGGTAG
CTGAGAATGCGGCTAATGCAGCTCAATATGATAAAGGTTGGACCTCGCCTACAGCTACAGCAAATGTAAAAAGTGTTGCT
ATTGCTAATGCAACGGGTGTTATTACAATTACTTACGATACGCCTGTCTCTGATGCTGCAGCTAATACTTTAGTGTTGGA
ACCATATACTACCGATGGTGCTGGTAAAGCTGCGGGATTGCCTGACTCTACAAAAGCTTACACTCCGCCAGAAGCTCAAA
TTCAATGGGCTTGTTTAGCGGCAGGTGCTACAGCTAAAGCAGGGACTACGGCTGGAACTTTACCTTCAAAACTAGCTCCG
TCTAGTTGCCGTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-164)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

50.292

100

0.524
  pilA2 Legionella pneumophila str. Paris

50

100

0.506
  pilA2 Legionella pneumophila strain ERS1305867

49.398

100

0.5
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

37.968

100

0.433
  pilE Neisseria gonorrhoeae MS11

38.506

100

0.409
  comP Acinetobacter baylyi ADP1

44.595

90.244

0.402
  pilA Acinetobacter baumannii strain A118

41.892

90.244

0.378