Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LJ360_RS04880 Genome accession   NZ_CP110342
Coordinates   1094220..1096295 (+) Length   691 a.a.
NCBI ID   WP_264995442.1    Uniprot ID   A0A9E7WD75
Organism   Marinobacter sp. AN1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1089220..1101295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJ360_RS04860 (LJ360_04860) pilM 1091367..1092431 (+) 1065 WP_091851301.1 pilus assembly protein PilM Machinery gene
  LJ360_RS04865 (LJ360_04865) - 1092431..1092997 (+) 567 WP_264995441.1 PilN domain-containing protein -
  LJ360_RS04870 (LJ360_04870) - 1092994..1093605 (+) 612 WP_091851307.1 type 4a pilus biogenesis protein PilO -
  LJ360_RS04875 (LJ360_04875) - 1093608..1094153 (+) 546 WP_091851310.1 pilus assembly protein PilP -
  LJ360_RS04880 (LJ360_04880) pilQ 1094220..1096295 (+) 2076 WP_264995442.1 type IV pilus secretin PilQ Machinery gene
  LJ360_RS04885 (LJ360_04885) aroK 1096392..1096958 (+) 567 WP_091851315.1 shikimate kinase AroK -
  LJ360_RS04890 (LJ360_04890) aroB 1096951..1098042 (+) 1092 WP_264995443.1 3-dehydroquinate synthase -
  LJ360_RS04895 (LJ360_04895) - 1098065..1099585 (+) 1521 WP_264995444.1 AAA family ATPase -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 74579.42 Da        Isoelectric Point: 4.2175

>NTDB_id=754127 LJ360_RS04880 WP_264995442.1 1094220..1096295(+) (pilQ) [Marinobacter sp. AN1]
MFRKFTVWMSAAGLAMAAGIANAATLQDVEFSSLSGDRTEVVLSFDETPPEPSGYTIERPARIAIDLKGTVSGLDSRNMS
LGDGNTQSMTVVETQDRTRLIFNLVELAPYDTEVSGNQLVITIGDADSGAAVAGSGGSDSVETASSGTRTSTSARVSGDA
ITGVDFRRGADGEGRVIIDLSNSRVPVALNEQGGRIRLVMDATEVPNDLRRRLDVTDFATPVTRVDTFTEGGDAIVEIRP
EGAYDYLAYQSGNRFTVSVEKLTEEEAERRREEKFPYTGDKLSLNFQDIEVRSVLQLIADFTGLNLVASDTVSGSITLRL
QNVPWDQALDLILKTKGLDKRQIGNVLLVAPAEEIAARERLELETNKQIAELAPVRLEIIQVNYAKAGDIVGLIEQDEEL
ISDRGFISSDVRTNTISVRETADKLEEIRRLVNTWDIPVRQVSIEARIVRAQTNVAESLGVRWGGGYLDPDGSNTRFGSG
SIEGNESLWNDNEIVFPDALAVDLGVSDAGASSFAIGLGGADFLVELELSALESDGKAELVSQPKVVTADRQTATIKSGE
EIPYQKATSSGATSVSFKEAALSLEVTPQITPDNKIIMDLRVNQDSRGQETAGIPSINTNEVTTQVLVGNGETVVLGGIF
QSEIATTVTKTPFLGDIPYVGALFRRTENIDERSELLIFITPKIMRGDLID

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=754127 LJ360_RS04880 WP_264995442.1 1094220..1096295(+) (pilQ) [Marinobacter sp. AN1]
ATGTTCAGAAAATTCACGGTATGGATGAGCGCGGCGGGACTGGCAATGGCTGCCGGTATCGCTAACGCGGCAACGCTTCA
GGACGTGGAGTTTTCCTCGCTCTCTGGCGACCGCACCGAGGTGGTGTTGAGTTTTGACGAGACACCACCGGAACCTTCCG
GTTACACCATCGAGCGGCCGGCGCGGATTGCCATTGACCTGAAAGGTACGGTGAGCGGTCTCGACAGCCGCAACATGTCC
CTGGGTGATGGCAATACCCAGAGCATGACAGTGGTGGAAACACAGGATCGGACCCGCCTGATTTTCAATCTCGTGGAGCT
TGCGCCCTACGACACTGAAGTGAGCGGGAACCAGTTGGTCATCACCATCGGCGATGCTGATTCCGGGGCAGCTGTCGCCG
GTTCCGGTGGCTCGGATTCCGTGGAAACAGCCTCGAGTGGTACCCGTACTTCCACCTCGGCTCGGGTATCCGGTGACGCT
ATCACGGGGGTTGATTTCCGCCGAGGAGCTGACGGCGAGGGGCGGGTAATCATCGACCTGTCCAACAGCCGCGTTCCGGT
AGCGCTCAATGAGCAGGGTGGCCGCATCCGGCTGGTTATGGATGCCACAGAGGTTCCCAACGACCTTCGCCGGCGACTGG
ACGTGACCGACTTTGCCACTCCGGTGACCCGGGTTGACACCTTCACCGAAGGTGGTGATGCGATTGTCGAGATACGCCCA
GAGGGCGCCTACGATTACCTGGCCTATCAGTCCGGCAACCGCTTTACCGTGAGTGTCGAGAAGCTGACCGAAGAGGAAGC
CGAGCGTCGTCGCGAGGAGAAGTTCCCATACACTGGCGACAAGCTCTCCCTGAACTTCCAGGACATCGAAGTGCGCTCGG
TGCTGCAGCTGATCGCCGACTTCACCGGCCTGAACCTGGTGGCCAGTGATACGGTATCCGGCAGCATTACCCTGCGCCTG
CAGAATGTACCCTGGGACCAGGCGCTGGACCTGATCCTCAAGACCAAGGGGCTCGACAAGCGCCAGATTGGTAACGTACT
CCTGGTCGCACCGGCCGAAGAAATTGCTGCTCGCGAGCGGCTGGAGCTGGAAACCAATAAACAGATTGCCGAGCTGGCTC
CGGTTCGACTGGAAATTATCCAGGTCAACTACGCCAAGGCCGGGGATATCGTTGGCCTGATCGAGCAGGATGAAGAGCTG
ATTTCGGACCGTGGCTTCATCTCCTCCGATGTGCGCACCAATACCATCAGTGTGCGTGAGACTGCCGATAAACTGGAAGA
AATCCGCAGGCTGGTGAACACCTGGGATATCCCCGTACGCCAGGTTTCCATTGAGGCCCGCATTGTCCGCGCCCAGACTA
ACGTAGCCGAGAGCCTGGGGGTTCGTTGGGGGGGTGGTTACCTTGATCCGGATGGCAGTAACACACGTTTTGGCAGTGGA
TCCATCGAAGGCAACGAATCACTCTGGAACGATAACGAGATTGTTTTCCCTGATGCACTTGCGGTAGATCTGGGTGTTTC
CGACGCCGGTGCCTCGTCCTTCGCGATTGGCCTGGGTGGTGCTGACTTCCTGGTCGAACTTGAACTGTCTGCGCTCGAAA
GCGATGGCAAGGCCGAGCTTGTTTCCCAGCCGAAGGTTGTCACCGCTGATCGTCAGACAGCGACGATCAAGTCCGGTGAA
GAAATTCCCTACCAGAAAGCGACCTCCAGTGGTGCCACTTCAGTATCCTTCAAGGAAGCTGCACTTTCCCTGGAAGTGAC
TCCACAGATAACGCCGGATAACAAGATCATCATGGATCTTCGGGTGAACCAGGATTCCCGGGGCCAGGAGACCGCTGGTA
TTCCGAGTATCAATACCAATGAGGTCACCACCCAGGTTCTCGTGGGCAATGGCGAAACCGTTGTGTTGGGTGGTATCTTC
CAGTCTGAAATCGCCACGACCGTCACCAAGACGCCGTTCCTCGGTGACATTCCCTACGTGGGGGCGCTGTTCCGTCGTAC
CGAGAATATTGACGAGCGAAGCGAACTGCTGATCTTCATCACACCGAAGATCATGAGGGGCGATCTGATCGATTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(531-686)

Bacterial type II/III secretion system short domain (Secretin_N)

(378-441)

Secretin and TonB N terminus short domain (STN)

(305-351)

AMIN domain (AMIN)

(36-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

52.564

100

0.534
  pilQ Acinetobacter baumannii strain A118

40.135

100

0.43
  pilQ Acinetobacter baumannii D1279779

40.135

100

0.43
  comQ Acinetobacter baylyi ADP1

40.358

100

0.424
  pilQ Legionella pneumophila strain ERS1305867

39.912

98.263

0.392
  pilQ Legionella pneumophila strain Lp02

39.764

98.263

0.391