Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   LJ360_RS04860 Genome accession   NZ_CP110342
Coordinates   1091367..1092431 (+) Length   354 a.a.
NCBI ID   WP_091851301.1    Uniprot ID   -
Organism   Marinobacter sp. AN1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1086367..1097431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJ360_RS04845 (LJ360_04845) rpmE 1086827..1087048 (+) 222 WP_091851289.1 50S ribosomal protein L31 -
  LJ360_RS04850 (LJ360_04850) - 1087276..1088541 (+) 1266 WP_264995438.1 malic enzyme-like NAD(P)-binding protein -
  LJ360_RS04855 (LJ360_04855) - 1088606..1091089 (-) 2484 WP_413774416.1 penicillin-binding protein 1A -
  LJ360_RS04860 (LJ360_04860) pilM 1091367..1092431 (+) 1065 WP_091851301.1 pilus assembly protein PilM Machinery gene
  LJ360_RS04865 (LJ360_04865) - 1092431..1092997 (+) 567 WP_264995441.1 PilN domain-containing protein -
  LJ360_RS04870 (LJ360_04870) - 1092994..1093605 (+) 612 WP_091851307.1 type 4a pilus biogenesis protein PilO -
  LJ360_RS04875 (LJ360_04875) - 1093608..1094153 (+) 546 WP_091851310.1 pilus assembly protein PilP -
  LJ360_RS04880 (LJ360_04880) pilQ 1094220..1096295 (+) 2076 WP_264995442.1 type IV pilus secretin PilQ Machinery gene
  LJ360_RS04885 (LJ360_04885) aroK 1096392..1096958 (+) 567 WP_091851315.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37756.70 Da        Isoelectric Point: 4.2209

>NTDB_id=754126 LJ360_RS04860 WP_091851301.1 1091367..1092431(+) (pilM) [Marinobacter sp. AN1]
MFGLSGKKSSTVLGVDISSSSVKLLELSRQGSRYKVESHAVEPLPANAVVEKNITDVEAVGDAIKRVVSKARTGVKQAAV
AVSGSAVITKVIQMNAGLNEFELEDQIALEADQYIPYPLDEVAIDFEVQGPSETNPDQVDVLLAACRKENVDIREDALDI
AGLTAKIVDVEAYALERAYSLIEPQLESHGEELVVAIVDVGATMTTLSVLAGGQTVYTREQIFGGKQLTEEIQRRYGLSV
EEAGLAKKQGGLPDDYESEVLEPFREAVVQQVARALQFFFGASQYNAVDYVLLAGGTASITGLASMVEEKTATTTIVANP
FSDMAVGSRVNASALTNDAPSLMIACGLAMRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=754126 LJ360_RS04860 WP_091851301.1 1091367..1092431(+) (pilM) [Marinobacter sp. AN1]
GTGTTCGGATTATCAGGAAAAAAGTCCAGTACCGTGCTGGGAGTGGATATCAGTTCCAGTTCGGTAAAGCTGCTGGAGCT
CTCGAGGCAGGGCAGTCGCTACAAAGTGGAAAGCCATGCTGTCGAGCCGCTACCGGCAAATGCGGTTGTAGAGAAGAACA
TTACCGATGTGGAGGCAGTTGGTGACGCCATCAAGCGCGTCGTCAGCAAGGCCCGTACCGGTGTAAAGCAGGCTGCCGTG
GCGGTTTCCGGGTCAGCGGTGATCACCAAGGTGATCCAGATGAATGCCGGACTCAACGAGTTCGAGCTGGAAGACCAGAT
CGCACTTGAAGCGGACCAGTATATTCCCTATCCCCTGGACGAAGTCGCCATCGACTTCGAAGTGCAGGGGCCCTCCGAAA
CCAATCCCGACCAGGTCGACGTCCTGCTGGCGGCATGCCGGAAGGAGAACGTCGATATCCGCGAGGATGCCCTGGACATA
GCCGGGCTCACTGCGAAGATTGTTGACGTCGAGGCCTATGCGCTCGAGCGGGCATACAGTCTCATCGAACCCCAGCTGGA
GTCCCACGGTGAAGAGCTGGTGGTCGCCATTGTCGACGTGGGCGCTACCATGACCACCCTTAGCGTCCTGGCCGGTGGCC
AGACAGTTTACACCCGTGAGCAGATTTTCGGCGGCAAGCAGCTTACCGAGGAAATCCAGCGTCGTTACGGATTGTCTGTT
GAAGAGGCCGGCCTTGCCAAGAAACAGGGAGGCCTCCCGGATGACTACGAGAGTGAAGTGCTCGAGCCATTCCGGGAAGC
GGTAGTGCAGCAGGTGGCTCGGGCCTTGCAGTTCTTCTTCGGCGCCAGCCAGTACAATGCGGTGGACTATGTATTGCTGG
CCGGCGGAACCGCCTCGATTACGGGTCTCGCCAGCATGGTAGAGGAAAAGACGGCCACCACCACGATCGTCGCTAATCCG
TTCTCGGATATGGCCGTTGGCTCCCGGGTGAATGCGTCCGCACTCACCAACGACGCCCCCTCGCTGATGATTGCCTGTGG
ACTGGCGATGAGGAGCTTTGACTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

53.39

100

0.534
  comM Acinetobacter nosocomialis M2

53.39

100

0.534
  comM Acinetobacter baylyi ADP1

51.977

100

0.52
  pilM Legionella pneumophila strain ERS1305867

46.893

100

0.469