Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   UKS_RS08090 Genome accession   NZ_AP021887
Coordinates   1602736..1604703 (-) Length   655 a.a.
NCBI ID   WP_049497154.1    Uniprot ID   -
Organism   Streptococcus sp. 116-D4     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1597736..1609703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UKS_RS08075 (UKS_15600) rfbA 1598214..1599083 (-) 870 WP_156012614.1 glucose-1-phosphate thymidylyltransferase RfbA -
  UKS_RS08080 (UKS_15610) glf 1599140..1600240 (-) 1101 WP_156012616.1 UDP-galactopyranose mutase -
  UKS_RS08085 (UKS_15620) amiA3 1600574..1602532 (-) 1959 WP_156012618.1 peptide ABC transporter substrate-binding protein Regulator
  UKS_RS08090 (UKS_15630) amiA3 1602736..1604703 (-) 1968 WP_049497154.1 peptide ABC transporter substrate-binding protein Regulator
  UKS_RS08095 (UKS_15640) - 1605087..1606697 (-) 1611 WP_156012620.1 alpha-glucosidase -
  UKS_RS08100 (UKS_15650) - 1606850..1608334 (+) 1485 WP_156012622.1 DUF1846 domain-containing protein -
  UKS_RS08105 (UKS_15660) - 1608429..1608911 (+) 483 WP_000032547.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72634.39 Da        Isoelectric Point: 5.1334

>NTDB_id=75376 UKS_RS08090 WP_049497154.1 1602736..1604703(-) (amiA3) [Streptococcus sp. 116-D4]
MKSKKWILGAGLTMSAALLLTACGKSDKKADAPMSFSYVYAVDPSSLDYSITSKSSTSDVIGNVVDGLLENDKYGNLVPS
LAEDWTVSADGLTYTYKLRKGVKWYTSEGEEYAEVKAQDFVTGLKHAADAKSDGLSLIEKSIKGLEAYVSGETNDFSTVG
VKALDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNATGKDYGAPTPSSILYNGPYFLKSLISKSVIEYEKNPNYWDK
ENVKIDNVKLTFYDGSDQESLIRSFATGAYNTARLFPNSSSFASTKEKYGDQIIYSPQEATSYYFTFNVNRQSYNKTAKT
DEGQKVSTKEAMLNKNFRQAINFAFNRHAYTAQLNGEEGADKIIRNSLVPDNYVQVAGKTFGQLAQDELLRYGEQWKDVT
LTDGKDTIYNPTKAKSAFEKAKSELQAKGVSFPIHLDVPVEQTDVVAVQQTNSLKQSIEETLGTENVIVDVLQMTDNEKE
SITSQAKVPTQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGITKGKDPEVMAKVGLDEYKKLLDDAASETTNLD
KRYEKYAKAQAWVTDSSLLIPVASSGGSPMVSRAVPFTKAYSQVGIKGDPFIFKGMELQNDIVTTKEYEAALKKWQKEKL
ESNAQYQKDLEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=75376 UKS_RS08090 WP_049497154.1 1602736..1604703(-) (amiA3) [Streptococcus sp. 116-D4]
ATGAAATCGAAAAAGTGGATTTTAGGAGCAGGATTAACGATGAGTGCAGCCCTTCTTTTAACGGCTTGTGGGAAAAGTGA
TAAGAAAGCAGATGCCCCGATGAGCTTTTCTTATGTCTATGCGGTAGATCCTTCTTCCTTGGATTATAGCATTACGAGTA
AAAGTTCGACCTCTGATGTGATTGGTAATGTTGTTGATGGTCTTTTAGAGAATGATAAATATGGGAATCTTGTTCCGTCT
TTAGCAGAGGATTGGACTGTTTCAGCTGATGGCTTGACTTACACTTACAAACTTCGTAAGGGTGTGAAGTGGTATACTTC
TGAAGGAGAGGAGTATGCAGAAGTTAAGGCTCAGGACTTTGTTACAGGTTTGAAACATGCAGCAGATGCTAAGTCAGATG
GTCTTTCTTTGATTGAAAAATCAATTAAAGGTTTGGAGGCTTATGTTAGTGGTGAGACCAATGATTTTTCAACTGTAGGT
GTTAAAGCTCTTGATGATTATACGGTAGAATATACCCTTAATAAACCAGAAAGTTTTTGGAACTCTAAAGTAACAACAGC
AACCATGCTTCCTGTAAATGAAGAATTTTTGAATGCAACAGGAAAGGATTACGGAGCACCAACTCCATCAAGTATTCTTT
ACAACGGCCCATATTTTTTGAAATCTTTGATTTCTAAATCTGTGATTGAATATGAAAAAAATCCTAACTATTGGGATAAG
GAAAATGTCAAGATTGATAATGTAAAATTAACATTCTATGACGGATCAGATCAAGAATCCCTTATCCGTAGTTTCGCTAC
AGGAGCATATAATACAGCGAGACTTTTCCCAAATAGTTCAAGTTTTGCTTCAACCAAAGAGAAATATGGCGATCAGATTA
TTTATAGCCCTCAGGAAGCAACTAGTTACTATTTTACTTTTAATGTAAATCGTCAATCATATAATAAAACAGCCAAGACA
GATGAAGGACAAAAGGTTTCTACAAAAGAAGCTATGCTGAATAAAAATTTCCGTCAAGCGATTAATTTTGCCTTTAATCG
TCATGCCTATACAGCTCAATTAAACGGCGAAGAAGGTGCGGATAAGATTATTCGTAATAGTCTAGTGCCAGATAATTATG
TTCAGGTAGCAGGGAAGACTTTCGGACAGCTGGCTCAGGATGAACTGCTAAGATATGGAGAACAATGGAAAGATGTAACT
CTCACAGATGGCAAGGATACAATTTACAATCCTACAAAGGCTAAATCTGCGTTTGAAAAAGCGAAGTCAGAATTGCAAGC
TAAGGGAGTAAGTTTCCCGATTCATTTGGATGTACCAGTAGAACAGACAGACGTAGTTGCAGTTCAACAGACAAATTCAT
TAAAACAATCGATTGAAGAAACGCTTGGAACGGAAAATGTCATTGTAGATGTTCTTCAAATGACAGATAATGAGAAGGAA
AGTATTACTTCCCAAGCAAAAGTGCCAACTCAAAAAGATTATGATTTGAACGGAACAGGTTGGGGACCAGATTACCAAGA
TCCAGCAACCTATCTCAATATTCTAGATGCTAAGAAGGGTTCTGCTTTGAAACACCTAGGTATAACAAAGGGCAAGGATC
CTGAAGTCATGGCGAAAGTTGGCTTGGATGAATACAAGAAGCTCTTGGACGATGCTGCTTCTGAGACGACCAATCTTGAT
AAACGTTATGAGAAATATGCTAAGGCTCAAGCTTGGGTAACAGATAGTTCTCTCCTTATTCCAGTGGCGTCTTCAGGAGG
TTCTCCTATGGTAAGTCGTGCTGTACCATTTACTAAAGCTTATTCACAAGTTGGCATCAAAGGGGATCCATTTATTTTTA
AAGGAATGGAACTTCAAAATGATATTGTCACAACGAAAGAGTATGAGGCAGCTCTCAAGAAGTGGCAAAAGGAAAAACTA
GAATCGAATGCTCAATATCAAAAGGATTTAGAAAAACACGTAAAATGA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

52.049

100

0.524
  amiA Streptococcus salivarius strain HSISS4

52.128

100

0.524
  amiA3 Streptococcus thermophilus LMG 18311

51.593

100

0.519

Multiple sequence alignment