Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   UKS_RS08470 Genome accession   NZ_AP021887
Coordinates   1689098..1690855 (-) Length   585 a.a.
NCBI ID   WP_156012715.1    Uniprot ID   -
Organism   Streptococcus sp. 116-D4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1684098..1695855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UKS_RS08435 (UKS_16320) - 1684441..1686108 (-) 1668 WP_156012705.1 DAK2 domain-containing protein -
  UKS_RS08440 (UKS_16330) - 1686111..1686476 (-) 366 WP_156012707.1 Asp23/Gls24 family envelope stress response protein -
  UKS_RS08445 (UKS_16340) rpmB 1686632..1686820 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  UKS_RS08450 (UKS_16350) - 1686927..1687601 (-) 675 WP_156012709.1 hypothetical protein -
  UKS_RS08455 (UKS_16360) - 1687606..1688052 (-) 447 WP_004250544.1 LytTR family DNA-binding domain-containing protein -
  UKS_RS08460 (UKS_16370) - 1688171..1688674 (-) 504 WP_156012711.1 phosphatase PAP2 family protein -
  UKS_RS08465 (UKS_16380) - 1688677..1689033 (-) 357 WP_156012713.1 DUF2200 family protein -
  UKS_RS08470 (UKS_16390) rcrQ 1689098..1690855 (-) 1758 WP_156012715.1 ABC transporter ATP-binding protein Regulator
  UKS_RS08475 (UKS_16400) rcrP 1690845..1692614 (-) 1770 WP_156012717.1 ABC transporter ATP-binding protein Regulator
  UKS_RS08480 (UKS_16410) - 1692598..1693059 (-) 462 WP_156012719.1 MarR family winged helix-turn-helix transcriptional regulator -
  UKS_RS09970 (UKS_16420) - 1693252..1693500 (+) 249 WP_332066846.1 hypothetical protein -
  UKS_RS08490 (UKS_16440) - 1693971..1694687 (-) 717 WP_156012721.1 YebC/PmpR family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64380.04 Da        Isoelectric Point: 4.9686

>NTDB_id=75378 UKS_RS08470 WP_156012715.1 1689098..1690855(-) (rcrQ) [Streptococcus sp. 116-D4]
MENKKMSLWKQCRPFLAGLQLPLLVAVVAAICSSIITVYGPTKIKEITNLISDGLMTEIDLEAVSSIASFLVILYVLGII
LNYTQAYIFSTSIQHFSKRLRTAIAEKINRLPLAYFDRHSQGDTLSRVTNDVDTAAQSLNQSLGTVISASFLLIAVLITM
FGMNWILALVTVVSTLVGFAAVSVIMAKSQGYFKAQQNNLAAVNGYVEEMYSGHNVVTSYNAVEPAKETFAGLNQNLHDS
IWKSQFVSGIMMPAMIFVGNFSYVLVIIVGAALALEGHISIGIIVAFMVYVRTFSQPLSQIAQGITSLQQASAAMTRVFE
FLGEEEMEDESHKERQLTNTKGEVVFDRVSFGYTPERTIIHDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYEIDKGS
IRIDGVDTKAMKRSEVHDAFSMVLQDTWLFEGTIRDNLVYNQTGISDEVIEAAKAVGIHHFITTLPDGYDTVLDDTVTLS
VGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNH
EELMAQGGFYADLYNSQFTEDQAEE

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=75378 UKS_RS08470 WP_156012715.1 1689098..1690855(-) (rcrQ) [Streptococcus sp. 116-D4]
ATGGAAAATAAGAAAATGTCCTTATGGAAACAGTGTAGACCTTTTCTAGCAGGTCTCCAACTTCCTCTACTAGTCGCAGT
TGTGGCGGCTATCTGTTCAAGTATTATCACGGTTTATGGACCAACTAAGATCAAAGAAATTACCAATTTGATTTCAGATG
GGTTAATGACAGAGATTGACCTAGAAGCTGTCTCAAGTATTGCTAGTTTTTTGGTTATTCTCTATGTGCTTGGGATTATC
CTGAACTATACGCAAGCCTACATTTTTTCAACCAGTATCCAACATTTCTCAAAACGTTTGCGGACAGCTATTGCTGAGAA
AATCAATCGCTTGCCACTTGCTTATTTTGACCGTCATTCTCAAGGGGACACCCTTTCTCGTGTAACGAATGATGTTGATA
CAGCCGCTCAATCTCTCAACCAAAGTTTGGGAACAGTGATTTCAGCTAGCTTCTTGCTGATTGCTGTTTTGATTACCATG
TTTGGTATGAACTGGATTTTGGCACTGGTAACCGTTGTTTCAACTCTTGTTGGATTTGCAGCGGTCTCAGTGATTATGGC
TAAATCTCAAGGCTACTTTAAAGCTCAACAAAACAACCTAGCAGCTGTAAATGGCTATGTGGAAGAAATGTACTCTGGCC
ACAATGTGGTGACCAGCTATAATGCTGTGGAACCAGCAAAAGAAACATTTGCAGGCTTGAATCAGAATCTACATGATAGC
ATCTGGAAATCTCAGTTTGTCTCTGGAATTATGATGCCAGCCATGATATTTGTAGGCAACTTTAGTTATGTTCTAGTCAT
TATCGTCGGTGCTGCCTTGGCTCTTGAAGGGCATATCAGTATCGGGATTATTGTAGCCTTCATGGTTTATGTTCGAACCT
TCTCGCAACCCTTATCACAGATTGCCCAAGGAATTACCAGCTTACAACAAGCTAGCGCAGCCATGACTCGTGTCTTCGAA
TTTCTAGGTGAAGAGGAAATGGAAGATGAATCTCATAAGGAAAGACAATTGACCAACACGAAGGGTGAAGTAGTCTTTGA
CAGAGTTTCATTTGGCTACACACCGGAGCGAACAATCATTCATGACTTTTCTGCGACAGCTCATGCAGGCCAAAAGGTCG
CGATTGTTGGACCGACTGGTGCTGGGAAGACGACCATTGTTAACCTCTTGATGAAATTCTATGAGATTGATAAGGGAAGT
ATTCGCATTGATGGTGTGGATACCAAGGCTATGAAGCGCTCAGAAGTACACGATGCCTTTTCAATGGTCTTGCAGGATAC
CTGGCTCTTTGAAGGAACCATTCGTGACAATCTCGTCTACAATCAAACAGGTATCAGTGATGAAGTGATTGAAGCTGCCA
AAGCAGTAGGAATCCATCACTTCATCACAACCTTACCTGATGGATACGATACAGTTTTAGATGATACAGTGACCTTGTCA
GTCGGACAGAAACAACTCTTGACCATTGCTCGTGCTCTGCTCAAAGATGCTCCGCTCTTGATTCTGGACGAAGCAACATC
CTCAGTTGATACTCGTACGGAGGAGTTGATTCAAAAGGCTATGGACCGTTTGATGGAGGGACGCACATCCTTTGTTATCG
CCCACCGCTTGTCAACGATCCGCAATGCTGATTTGATTCTGGTTATGAAAGATGGAAATATCATCGAGCAAGGCAATCAT
GAAGAGCTGATGGCTCAGGGTGGTTTCTATGCAGACCTCTACAATAGTCAATTTACAGAAGACCAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-507)

ABC transporter transmembrane region (ABC_membrane)

(23-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

67.123

99.829

0.67

Multiple sequence alignment