Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OM992_RS18215 Genome accession   NZ_CP110268
Coordinates   3512669..3513265 (+) Length   198 a.a.
NCBI ID   WP_003151513.1    Uniprot ID   I2CAH7
Organism   Bacillus siamensis strain YB-1631     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3507669..3518265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM992_RS18200 (OM992_18200) - 3508372..3509841 (-) 1470 WP_264819200.1 glycoside hydrolase family 32 protein -
  OM992_RS18205 (OM992_18205) - 3509856..3511088 (-) 1233 WP_064778572.1 MFS transporter -
  OM992_RS18210 (OM992_18210) - 3511453..3512427 (+) 975 WP_264819201.1 LacI family DNA-binding transcriptional regulator -
  OM992_RS18215 (OM992_18215) clpP 3512669..3513265 (+) 597 WP_003151513.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  OM992_RS18220 (OM992_18220) - 3513306..3514166 (-) 861 WP_016937834.1 LysR family transcriptional regulator -
  OM992_RS18225 (OM992_18225) - 3514340..3515470 (+) 1131 WP_264819203.1 2-methylaconitate cis-trans isomerase PrpF family protein -
  OM992_RS18230 (OM992_18230) - 3515514..3516890 (+) 1377 WP_264819205.1 MFS transporter -
  OM992_RS18235 (OM992_18235) - 3517069..3517908 (+) 840 WP_188154408.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21831.06 Da        Isoelectric Point: 4.6982

>NTDB_id=753692 OM992_RS18215 WP_003151513.1 3512669..3513265(+) (clpP) [Bacillus siamensis strain YB-1631]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ
PLEVIERDTDRDNFKSADEALEYGLIDKVLTRNTEDQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=753692 OM992_RS18215 WP_003151513.1 3512669..3513265(+) (clpP) [Bacillus siamensis strain YB-1631]
ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGAGAAAGAGCTTATGACATTTACTCCCGTCTTTTGAAGGA
CCGTATTATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCCTTGAAGCGG
AAGACCCTGAAAAAGATATTTCCATTTACATTAACAGCCCTGGCGGATCAATCACTGCCGGTATGGCAATCTACGATACA
ATGCAGTTCATTAAACCGAAAGTATCTACAATCTGCATCGGGATGGCCGCTTCTATGGGAGCATTTTTACTTGCAGCCGG
TGAAAAAGGCAAACGTTACGCGCTTCCTAACAGTGAAGTCATGATTCACCAGCCGCTTGGCGGAGCGCAAGGACAGGCGA
CAGAAATTGAAATCGCAGCAAAACGCATTCTCTTGCTTCGCGATAAATTAAACAAAGTGCTTGCTGAACGTACCGGCCAG
CCGCTTGAAGTGATCGAGCGCGATACAGACCGCGACAACTTCAAATCAGCTGATGAAGCTTTAGAATACGGCTTAATCGA
TAAAGTGCTGACACGCAATACGGAAGACCAGAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2CAH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

95.96

100

0.96
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.586

96.465

0.662
  clpP Streptococcus thermophilus LMG 18311

58.549

97.475

0.571
  clpP Streptococcus thermophilus LMD-9

58.549

97.475

0.571
  clpP Streptococcus pneumoniae D39

57.216

97.98

0.561
  clpP Streptococcus pneumoniae Rx1

57.216

97.98

0.561
  clpP Streptococcus pneumoniae R6

57.216

97.98

0.561
  clpP Streptococcus pneumoniae TIGR4

57.216

97.98

0.561
  clpP Lactococcus lactis subsp. cremoris KW2

56.701

97.98

0.556
  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54
  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.639

97.98

0.535
  clpP Streptococcus mutans UA159

54.639

97.98

0.535