Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   UKS_RS01550 Genome accession   NZ_AP021887
Coordinates   295801..297789 (+) Length   662 a.a.
NCBI ID   WP_156011487.1    Uniprot ID   -
Organism   Streptococcus sp. 116-D4     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 290801..302789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UKS_RS01520 (UKS_02730) - 291220..291450 (+) 231 WP_080977062.1 DUF1146 family protein -
  UKS_RS01525 (UKS_02740) murA 291474..292757 (+) 1284 WP_156011481.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  UKS_RS01530 (UKS_02750) - 292750..292938 (+) 189 WP_173020490.1 DNA-directed RNA polymerase subunit beta -
  UKS_RS01535 (UKS_02760) endA 292977..293801 (+) 825 WP_156011485.1 DNA-entry nuclease EndA Machinery gene
  UKS_RS01540 (UKS_02770) - 294044..295375 (+) 1332 WP_049496219.1 hemolysin family protein -
  UKS_RS01550 (UKS_02780) amiA3 295801..297789 (+) 1989 WP_156011487.1 peptide ABC transporter substrate-binding protein Regulator
  UKS_RS01555 (UKS_02790) amiC 297856..299352 (+) 1497 WP_156011488.1 ABC transporter permease Regulator
  UKS_RS01560 (UKS_02800) amiD 299352..300278 (+) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  UKS_RS01565 (UKS_02810) amiE 300287..301354 (+) 1068 WP_156011490.1 ABC transporter ATP-binding protein Regulator
  UKS_RS01570 (UKS_02820) amiF 301365..302291 (+) 927 WP_156011492.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72498.82 Da        Isoelectric Point: 4.8792

>NTDB_id=75334 UKS_RS01550 WP_156011487.1 295801..297789(+) (amiA3) [Streptococcus sp. 116-D4]
MKKSQVLAVAGATLLASGVLAACSNTSSNNAKLAKDYQYVYQTDPETLDYIVSNIDSTSFITTNAVDGLLANDKYGNLVP
SIAESWTVSKDGLTYTYKIRQDAKWVTAEGEEYAPVTAKDFVTGLKHAVDGKSKGLSIVSSSIKGLEGYIKGETSDFSTV
GVKALDDQTLEYTLNQPETFWNDKTTSGVLMPVNEEFLTSKGEGFGAPTDANSILYNGPFVLKAVTPKSSIEMAKNDAYW
DKENVKIENVKFTFWDGKDQDVIAKGFSDGQYSKARIFPTSSTYEKYAADFKDNIYFNEPGAGVATVSLNYGRTTYNHTA
KTSDAQKTSTQKALLNKEFRQALNFAVDRNSYSAQTNGTDGAAVAIRNTFAPYNLQVGKKTFGELVQDSLAKTNSSTWSN
VSLADSQNGLYNEEKAKEVFAKAKSSLQAEGVEFPIHLDALVIQESTAVVNRVQSLKQSIEKVLGSDNVVVDLQQMTQAE
ALPISFSAPTAKEQDWDIHTLLGWNPDYQDPSTFLDQFVLKGGSTRLYLGIDQNTDASVVGKLALADYGKLLDDANSENQ
DVQKRYEKYAVAQAWLTDNALTIPVMASPKETAVSYVSKVLPFSSSYSVAGLKGENAGYLKYTEVGEKAITKEEYEKARE
KWLKEKTESNEKAQKELASHVK

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=75334 UKS_RS01550 WP_156011487.1 295801..297789(+) (amiA3) [Streptococcus sp. 116-D4]
ATGAAAAAAAGTCAAGTGCTTGCTGTAGCGGGGGCTACCTTATTAGCGTCAGGAGTTCTAGCTGCGTGTTCAAACACTAG
TTCAAATAATGCTAAACTAGCAAAAGATTACCAATATGTTTATCAAACAGACCCAGAAACTTTGGATTATATCGTTAGCA
ATATCGATTCAACATCTTTTATCACAACAAATGCTGTAGATGGTTTGTTGGCTAACGATAAATATGGTAATCTGGTTCCT
TCTATCGCTGAATCATGGACAGTTTCAAAAGATGGTTTGACTTATACCTATAAAATCCGTCAGGATGCTAAATGGGTGAC
AGCAGAGGGAGAAGAATACGCTCCTGTAACTGCTAAAGACTTCGTTACTGGTTTGAAACATGCTGTAGATGGAAAATCAA
AAGGACTTTCAATCGTTAGCTCTTCTATTAAGGGGTTAGAAGGCTACATCAAGGGTGAAACAAGCGATTTTTCAACCGTT
GGTGTAAAAGCACTTGATGACCAAACACTAGAATATACCTTGAACCAGCCAGAAACTTTCTGGAATGACAAGACAACTAG
TGGTGTTTTGATGCCAGTTAATGAAGAGTTCTTAACTTCAAAAGGGGAAGGTTTTGGTGCCCCAACAGATGCTAACTCTA
TTCTTTATAACGGTCCATTTGTCTTGAAGGCTGTAACTCCAAAATCATCCATCGAGATGGCTAAAAATGACGCTTACTGG
GACAAAGAAAATGTAAAAATTGAGAACGTTAAGTTCACTTTCTGGGATGGTAAGGACCAGGATGTGATTGCTAAAGGTTT
TTCTGATGGTCAATATAGCAAGGCTCGTATCTTCCCTACAAGTTCTACATATGAAAAATATGCAGCTGACTTCAAAGATA
ACATTTACTTTAATGAACCAGGTGCGGGTGTTGCAACTGTCAGCTTGAACTATGGCCGTACAACCTATAACCACACTGCC
AAAACAAGTGATGCTCAAAAGACATCTACTCAGAAAGCATTGCTAAACAAGGAATTCCGTCAAGCCTTGAACTTTGCAGT
CGATCGCAATTCTTATTCTGCTCAAACAAATGGTACTGATGGAGCTGCAGTAGCCATCCGCAATACGTTTGCACCTTATA
ATCTTCAAGTTGGTAAGAAAACATTTGGTGAATTGGTACAAGATAGCTTGGCTAAGACAAATTCTTCTACTTGGTCAAAC
GTGTCTCTAGCGGATTCTCAAAATGGACTTTACAATGAAGAAAAAGCGAAAGAAGTCTTTGCTAAAGCTAAATCAAGCCT
GCAAGCTGAAGGTGTTGAATTTCCAATTCACTTGGATGCTTTGGTTATCCAAGAATCAACAGCGGTTGTAAACCGTGTTC
AATCATTGAAACAATCAATTGAAAAAGTATTGGGTTCAGATAATGTTGTTGTAGACTTACAACAAATGACTCAAGCAGAA
GCTTTACCAATTTCATTTAGCGCTCCAACAGCTAAAGAGCAAGACTGGGATATCCATACCTTACTAGGATGGAACCCTGA
CTATCAAGATCCTTCTACTTTCTTGGATCAGTTCGTCCTTAAGGGAGGAAGTACTCGTCTTTACCTTGGTATTGACCAAA
ATACAGATGCATCAGTAGTGGGCAAACTTGCTTTAGCTGATTATGGAAAATTACTTGATGACGCAAACAGTGAAAACCAA
GATGTTCAAAAACGTTATGAAAAATACGCAGTAGCACAAGCTTGGTTGACTGACAACGCTTTGACAATTCCAGTAATGGC
TTCTCCTAAAGAAACAGCCGTTTCATATGTTTCAAAAGTTCTACCATTTAGTTCTTCATATTCTGTAGCTGGCCTTAAAG
GTGAAAATGCAGGATACCTGAAGTACACTGAAGTTGGTGAAAAAGCAATCACCAAAGAAGAGTATGAAAAAGCTCGTGAA
AAATGGTTGAAAGAAAAGACTGAATCAAACGAGAAAGCTCAAAAAGAATTGGCAAGTCATGTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

54.217

100

0.544
  amiA3 Streptococcus thermophilus LMG 18311

53.916

100

0.541
  amiA Streptococcus salivarius strain HSISS4

53.313

100

0.535

Multiple sequence alignment