Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   UKS_RS01555 Genome accession   NZ_AP021887
Coordinates   297856..299352 (+) Length   498 a.a.
NCBI ID   WP_156011488.1    Uniprot ID   A0A6H3S2J0
Organism   Streptococcus sp. 116-D4     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 292856..304352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UKS_RS01535 (UKS_02760) endA 292977..293801 (+) 825 WP_156011485.1 DNA-entry nuclease EndA Machinery gene
  UKS_RS01540 (UKS_02770) - 294044..295375 (+) 1332 WP_049496219.1 hemolysin family protein -
  UKS_RS01550 (UKS_02780) amiA3 295801..297789 (+) 1989 WP_156011487.1 peptide ABC transporter substrate-binding protein Regulator
  UKS_RS01555 (UKS_02790) amiC 297856..299352 (+) 1497 WP_156011488.1 ABC transporter permease Regulator
  UKS_RS01560 (UKS_02800) amiD 299352..300278 (+) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  UKS_RS01565 (UKS_02810) amiE 300287..301354 (+) 1068 WP_156011490.1 ABC transporter ATP-binding protein Regulator
  UKS_RS01570 (UKS_02820) amiF 301365..302291 (+) 927 WP_156011492.1 ATP-binding cassette domain-containing protein Regulator
  UKS_RS01575 (UKS_02830) - 302746..303624 (-) 879 WP_156011494.1 LysR family transcriptional regulator -
  UKS_RS01580 (UKS_02840) - 303752..304102 (-) 351 WP_156011497.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55760.29 Da        Isoelectric Point: 9.2367

>NTDB_id=75335 UKS_RS01555 WP_156011488.1 297856..299352(+) (amiC) [Streptococcus sp. 116-D4]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTADKRDNYENTVYERMGYIEYYDTKELQEKAS
QMDASVTVEANDTNKAIYEKYIKQIGHGWTLGEFTESGQFYATREIPIFERVFKFYANLLDIDHTNKIQDPENPNLERYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNLNLGDSYPTYANTPVLQVITQGQGQTKTSEVQFPTGKKTSSV
NIYSRTYKSPSQADSREIANYGKDDPYTATESNYQYPSMIASSAVVGLIGLVISYAIAVPLGSAMARFKNTWIDSFSTGV
LTFLMALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPGTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLLLGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=75335 UKS_RS01555 WP_156011488.1 297856..299352(+) (amiC) [Streptococcus sp. 116-D4]
ATGAAAAAATATATTTTTATGCGTGTTTTACGGTCATTGGTTTCTATCTTCTTAGTAACAACTTTGACTTACACGATTAT
CTATACAATGGTTCCTCGAAAATTGATTTTCAAACAGGATACCAACTATAACAAAATTGCGACAACTGCTGATAAACGTG
ATAACTATGAAAATACTGTTTATGAGCGTATGGGCTATATCGAGTACTACGATACCAAAGAGTTGCAAGAAAAAGCTAGT
CAGATGGATGCTTCTGTAACCGTTGAAGCAAATGATACCAACAAGGCTATCTACGAAAAATACATCAAACAAATCGGTCA
TGGTTGGACCTTGGGAGAATTTACTGAAAGTGGCCAATTCTACGCTACTCGTGAAATCCCAATTTTCGAGCGTGTGTTCA
AATTCTATGCAAACTTGCTTGACATTGACCATACAAACAAGATTCAAGACCCGGAAAATCCTAATTTAGAGCGTTATTTG
CGATTTGAAAACGATCCGGCTATTGGATGGTCTCTAGTAGGTTCAGGGACTAAACATAAATACCTCTTGTACTTCAACAG
TCAATTCCCATTTGTTCACCAAAACTTTGTCAACTTGAACTTAGGAGATTCTTACCCAACTTATGCCAATACTCCTGTTC
TTCAAGTTATCACACAAGGTCAAGGACAAACCAAGACTTCAGAAGTTCAATTCCCAACTGGTAAGAAAACTTCTTCTGTA
AATATTTACTCAAGAACCTACAAGTCTCCTAGTCAGGCTGATTCACGTGAAATAGCCAATTATGGGAAAGATGATCCTTA
TACAGCTACAGAAAGCAACTACCAATATCCTTCTATGATTGCTAGCTCTGCAGTCGTTGGATTGATTGGTTTGGTAATTT
CTTATGCGATTGCTGTGCCACTTGGTTCAGCAATGGCTCGCTTCAAGAATACTTGGATTGATAGCTTTTCAACAGGGGTT
TTGACCTTCTTGATGGCTCTTCCAACCATTGCCTTGGTTTACATTGTTCGTTTGATTGGATCATCAATTGGTCTTCCAGA
TTCATTCCCTATTTTGGGTGCTGGAGATTGGCGTTCGTATGTTTTACCAGCAGTGATTCTTGGTTTGTTGGGTGCTCCTG
GTACAGCTATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAGGACTTTGTTCGTTTTGCTCGTGCCAAAGGTTTG
TCTGAAAAAGAAATTTCAAACAAACACATCTTTAAAAATGCCATGGTTCCGCTGGTTTCAGGAATTCCTGGTGCCGTTAT
CGGGGTTATTGGTGGTGCAACCCTTACTGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCATCTAATAACTCTATGGTCGTTGGTCTTGTCTTCATCTTTACATGTATTTCTATCTTCTCACTTCTTTTGGGAGAT
ATTTGGATGACTATTATTGACCCACGTATTAAATTGACTGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H3S2J0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.908

100

0.769
  amiC Streptococcus thermophilus LMG 18311

76.707

100

0.767
  amiC Streptococcus thermophilus LMD-9

76.305

100

0.763

Multiple sequence alignment