Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   UKS_RS01570 Genome accession   NZ_AP021887
Coordinates   301365..302291 (+) Length   308 a.a.
NCBI ID   WP_156011492.1    Uniprot ID   A0A6H3S3J6
Organism   Streptococcus sp. 116-D4     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 296365..307291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UKS_RS01555 (UKS_02790) amiC 297856..299352 (+) 1497 WP_156011488.1 ABC transporter permease Regulator
  UKS_RS01560 (UKS_02800) amiD 299352..300278 (+) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  UKS_RS01565 (UKS_02810) amiE 300287..301354 (+) 1068 WP_156011490.1 ABC transporter ATP-binding protein Regulator
  UKS_RS01570 (UKS_02820) amiF 301365..302291 (+) 927 WP_156011492.1 ATP-binding cassette domain-containing protein Regulator
  UKS_RS01575 (UKS_02830) - 302746..303624 (-) 879 WP_156011494.1 LysR family transcriptional regulator -
  UKS_RS01580 (UKS_02840) - 303752..304102 (-) 351 WP_156011497.1 helix-turn-helix transcriptional regulator -
  UKS_RS01585 (UKS_02850) - 304460..306085 (+) 1626 WP_156011499.1 malolactic enzyme -
  UKS_RS01590 (UKS_02860) - 306163..307110 (+) 948 WP_156011501.1 AEC family transporter -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34747.78 Da        Isoelectric Point: 6.5100

>NTDB_id=75338 UKS_RS01570 WP_156011492.1 301365..302291(+) (amiF) [Streptococcus sp. 116-D4]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSGGDIIFDGQKINGKKSRE
QVAELIRRIQMIFQDPAASLNERATVNYIISEGLYNHHLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQQGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=75338 UKS_RS01570 WP_156011492.1 301365..302291(+) (amiF) [Streptococcus sp. 116-D4]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTGGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACGTTCTCGCTTGTTGGTGAGTCAGGTAGTGGGAAAACAACTATTGGTCGTG
CCATCATTGGTCTAAATGATACAAGTGGTGGTGATATTATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGTTGCGGAATTGATCCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTAA
TTATATTATTTCTGAAGGTCTTTACAATCACCATTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGTGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCGGATGAGCCTATTTCAGCTTTGGACGTTTCTGTGCGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAACTTGGCTTGACCTATCTATTTATTGCCCATGACTTGTCGGTCG
TTCGTTTTATTTCAGATCGTATCGCGGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCTAACCAAGCCGAATTGGCGCGTTACCAACAAGGGTTAAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H3S3J6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

84.918

99.026

0.841
  amiF Streptococcus salivarius strain HSISS4

84.918

99.026

0.841
  amiF Streptococcus thermophilus LMD-9

84.59

99.026

0.838

Multiple sequence alignment