Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OH720_RS01815 Genome accession   NZ_CP110128
Coordinates   397382..399424 (+) Length   680 a.a.
NCBI ID   WP_272604331.1    Uniprot ID   -
Organism   Pseudomonas sp. WJP1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 392382..404424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH720_RS01795 (OH720_01795) pilM 394600..395661 (+) 1062 WP_272604327.1 pilus assembly protein PilM Machinery gene
  OH720_RS01800 (OH720_01800) - 395661..396227 (+) 567 WP_272604328.1 PilN domain-containing protein -
  OH720_RS01805 (OH720_01805) pilO 396224..396844 (+) 621 WP_272604329.1 type 4a pilus biogenesis protein PilO -
  OH720_RS01810 (OH720_01810) - 396844..397368 (+) 525 WP_272604330.1 pilus assembly protein PilP -
  OH720_RS01815 (OH720_01815) pilQ 397382..399424 (+) 2043 WP_272604331.1 type IV pilus secretin PilQ Machinery gene
  OH720_RS01820 (OH720_01820) aroK 399429..399947 (+) 519 WP_032831512.1 shikimate kinase AroK -
  OH720_RS01825 (OH720_01825) aroB 400099..401199 (+) 1101 WP_180203922.1 3-dehydroquinate synthase -
  OH720_RS01830 (OH720_01830) - 401210..402793 (+) 1584 WP_272604332.1 AAA family ATPase -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 73762.87 Da        Isoelectric Point: 5.2919

>NTDB_id=752527 OH720_RS01815 WP_272604331.1 397382..399424(+) (pilQ) [Pseudomonas sp. WJP1]
MNRIFSALGVSLWIALSPMVQAVNLKALDVAALPGDRVELKLVFDEPPPTPRGYTTESPARIALDLPGVVSQLASKTRDL
GNGNARSATVVEAKDRARLTINLTQLSPYDFRVEGNNLFVVVGQSGKSPAPRAAAAVVPAPAHARAAVPAGKAIRAVDFQ
RGTQGEGNVVIDLSDPSIAPDIQEREGKIILSFTRTRLPEPLRVRLDVKDFATPVQFVNASATGDRATITIEPNGAFDYS
TYQTDNKLTVSIRPMTVDDLQKRNAGRNAYNGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQNVPWDQ
ALDLVLKTKGLDKRMVGNVLLVAPADEIAARERQELESQKQIADLAPLRRELLQVNYAKAADIAKLFQSVTNAEAKADER
GSITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSIQNKGNWSASGVGNGTSD
GGSSPFVDLGVANNTSGIGIAFITDNVLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQEASSSGATSVS
FKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGVFSNTQSKVVDKVPFL
GDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=752527 OH720_RS01815 WP_272604331.1 397382..399424(+) (pilQ) [Pseudomonas sp. WJP1]
ATGAACAGGATTTTCTCCGCCCTCGGAGTATCGCTATGGATAGCGTTGTCGCCGATGGTACAAGCGGTCAACCTCAAGGC
GCTGGATGTTGCCGCGTTGCCGGGGGACCGCGTCGAGTTGAAGCTGGTGTTCGACGAGCCACCTCCGACGCCCCGTGGCT
ACACCACGGAGTCCCCGGCCAGGATTGCCCTGGATCTGCCCGGTGTCGTCAGCCAGCTGGCGAGCAAGACTCGCGACCTG
GGCAATGGCAATGCCCGCAGCGCAACCGTGGTGGAGGCCAAGGATCGTGCGCGGCTGACCATCAATTTGACCCAGTTGAG
CCCCTACGACTTCCGGGTCGAAGGCAACAACCTGTTTGTGGTCGTCGGGCAGAGTGGCAAAAGCCCTGCACCAAGAGCGG
CTGCCGCTGTTGTACCGGCACCGGCCCATGCGCGTGCGGCTGTACCGGCAGGCAAGGCGATTCGTGCGGTGGATTTCCAG
CGGGGTACCCAGGGGGAAGGCAATGTCGTGATCGACTTGTCGGATCCGTCCATTGCGCCCGATATTCAGGAGCGCGAAGG
CAAGATCATTCTCAGCTTCACCAGGACCCGATTGCCCGAGCCATTGCGCGTGCGCCTGGACGTGAAGGATTTCGCCACAC
CGGTACAGTTCGTCAATGCCAGTGCGACGGGGGACAGGGCGACCATCACCATTGAGCCCAATGGTGCCTTCGACTATTCG
ACCTACCAGACCGACAACAAGCTGACCGTCAGCATCCGCCCGATGACGGTCGACGATCTGCAAAAGCGCAACGCCGGCCG
CAATGCCTACAACGGTGAAAAGCTCTCGCTGAACTTCCAGGACATCGACGTGCGCTCGGTGTTGCAGCTGATCGCCGATT
TCACCAACCTCAATCTGGTCGCCAGTGACACGGTGCAAGGGGGCATTACCCTGCGCCTGCAGAATGTACCCTGGGACCAG
GCGCTGGACCTGGTGTTGAAAACCAAGGGCCTGGACAAGCGCATGGTGGGAAATGTGCTGCTCGTCGCCCCGGCCGACGA
AATTGCCGCCCGTGAACGCCAGGAGCTGGAGTCACAGAAGCAGATTGCCGACCTGGCACCCCTGCGTCGGGAACTGTTGC
AGGTCAATTACGCCAAGGCGGCCGATATCGCCAAACTGTTCCAGTCGGTGACCAATGCCGAAGCGAAAGCCGACGAACGG
GGGTCGATCACCGTCGATGAGCGCACCAACAACATCATTGCCTACCAGACCCAGGACCGACTCGACGAACTGCGGCGGAT
CGTTGCGCAACTGGATATTCCAGTGCGCCAGGTGATGATCGAGGCGCGCATCGTCGAAGCCAACGTCGACTACGACAAGA
GCCTCGGCGTGCGCTGGGGTGGCTCGATACAGAACAAAGGCAACTGGAGCGCTTCGGGAGTCGGTAACGGCACCAGTGAC
GGCGGTAGCTCGCCGTTCGTCGACCTGGGGGTCGCCAACAACACGTCGGGCATCGGCATCGCCTTCATCACGGACAATGT
CTTGCTGGACCTTGAATTGTCGGCCATGGAAAAGACCGGCAACGGCGAAATCGTCTCGCAACCCAAGGTGGTCACCTCCG
ACAAGGAAACCGCAAAGATCCTCAAAGGCACCGAGATTCCCTACCAGGAAGCCAGCTCCAGCGGCGCTACGTCGGTCTCG
TTCAAGGAGGCTTCGCTGTCGCTGGAGGTGACGCCGCAGATCACGCCGGACAACCGGATCATCATGGAGGTCAAGGTTAC
CAAGGACGAGCCGGACTACCTGAACAAGGTCCAGGATGTACCGCCGATCAAGAAAAACGAGGTCAATGCCAAGGTCCTGG
TCAACGATGGCGAGACCATCGTCATTGGTGGTGTTTTCTCAAATACTCAAAGCAAGGTTGTAGATAAGGTGCCATTTCTT
GGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGACGTGGTTTCGGAGAAAAAATCCGAGCTGTTGGTGTTTCTCAC
ACCGCGTATCATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(515-671)

Bacterial type II/III secretion system short domain (Secretin_N)

(372-437)

Secretin and TonB N terminus short domain (STN)

(298-344)

AMIN domain (AMIN)

(37-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

73.147

100

0.769
  pilQ Acinetobacter baumannii strain A118

38.514

100

0.419
  pilQ Acinetobacter baumannii D1279779

38.514

100

0.419
  comQ Acinetobacter baylyi ADP1

41.279

100

0.418
  pilQ Legionella pneumophila strain Lp02

38.507

98.529

0.379
  pilQ Legionella pneumophila strain ERS1305867

38.358

98.529

0.378