Detailed information NTG0750240

Bioinformatically predicted

Overview

• Name: pilE
• Type: Machinery gene
• Locus tag: OHM81_RS29545
• Genome accession: NZ_CP109857
• Coordinates: 6426485..6426907 (+)
• Length: 140 a.a.
• NCBI ID: WP_338498916.1
• Uniprot ID: -
• Organism: Delftia tsuruhatensis strain GSK TC1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	6426574..6441311	6426485..6426907	flank	-333

Gene organization within MGE regions

Location: 6426485..6441311

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHM81_RS29545	pilE	6426485..6426907 (+)	423	WP_338498916.1	pilin	Machinery gene
OHM81_RS29550	-	6426952..6428985 (+)	2034	WP_338498919.1	hypothetical protein	-
OHM81_RS29555	-	6428982..6429863 (+)	882	WP_338498922.1	glycosyltransferase family 2 protein	-
OHM81_RS29560	-	6429901..6430950 (+)	1050	WP_338498925.1	glycosyltransferase family 2 protein	-
OHM81_RS29565	-	6430952..6432436 (-)	1485	WP_338498928.1	oligosaccharide flippase family protein	-
OHM81_RS29570	-	6432454..6433134 (-)	681	WP_338498930.1	cephalosporin hydroxylase family protein	-
OHM81_RS29575	-	6433174..6434337 (-)	1164	WP_338498932.1	class I SAM-dependent methyltransferase	-
OHM81_RS29580	-	6434330..6435220 (-)	891	WP_338498935.1	NAD(P)-dependent oxidoreductase	-
OHM81_RS29585	-	6435217..6436461 (-)	1245	WP_338500895.1	class I SAM-dependent methyltransferase	-
OHM81_RS29590	rfbC	6436464..6437030 (-)	567	WP_338498938.1	dTDP-4-dehydrorhamnose 3,5-epimerase	-
OHM81_RS29595	rfbG	6437027..6438118 (-)	1092	WP_338498941.1	CDP-glucose 4,6-dehydratase	-
OHM81_RS29600	rfbF	6438100..6438870 (-)	771	WP_338498944.1	glucose-1-phosphate cytidylyltransferase	-
OHM81_RS29605	-	6438884..6439900 (-)	1017	WP_338498947.1	glycosyltransferase family 4 protein	-
OHM81_RS29610	-	6440121..6441302 (-)	1182	WP_338498950.1	glycosyltransferase family 4 protein	-

Sequence

Protein

• Length: 140 a.a.
• Molecular weight: 14819.15 Da
• Isoelectric Point: 10.0548

>NTDB_id=750240 OHM81_RS29545 WP_338498916.1 6426485..6426907(+) (pilE) [Delftia tsuruhatensis strain GSK TC1]
MAKGFTLIELMIVLAIFGVLAAIALPNYQNYASRARVTEALNLMAGAKISVTEYRLSRNSWPSNNTDVGLAQPTSIKGSS
VQSVQVNGSVITAIMRSLAVPGGGVVVLKGSNTGDSMTWRCNPSVGTTIQTIFLPSECRQ

Nucleotide

• Length: 423 bp

>NTDB_id=750240 OHM81_RS29545 WP_338498916.1 6426485..6426907(+) (pilE) [Delftia tsuruhatensis strain GSK TC1]
ATGGCCAAAGGTTTCACATTGATAGAGCTAATGATTGTTTTGGCAATCTTTGGCGTACTGGCAGCCATTGCGCTGCCAAA
TTATCAGAACTATGCCTCTCGCGCCAGGGTGACAGAGGCGCTCAACCTGATGGCCGGCGCAAAAATATCGGTAACAGAAT
ACCGGCTCAGCCGAAATTCATGGCCCTCCAATAATACAGACGTGGGTTTGGCCCAACCCACCTCCATAAAAGGCTCCAGC
GTCCAGTCAGTACAGGTCAATGGCAGCGTGATCACGGCGATCATGCGCAGCCTTGCGGTTCCTGGCGGAGGAGTGGTTGT
TTTGAAGGGGAGCAACACGGGAGACTCAATGACCTGGCGATGCAACCCCTCTGTTGGAACGACCATTCAGACAATATTTC
TTCCATCAGAGTGCCGTCAATAG

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (3-25)

• Pilin (bacterial filament) (Pilin) (33-139)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilE	Neisseria gonorrhoeae MS11	45.86	100	0.514
pilE	Neisseria gonorrhoeae strain FA1090	43.59	100	0.486
pilA	Ralstonia pseudosolanacearum GMI1000	36.42	100	0.421
comP	Acinetobacter baylyi ADP1	37.662	100	0.414
pilA2	Legionella pneumophila str. Paris	39.416	97.857	0.386
pilA2	Legionella pneumophila strain ERS1305867	39.416	97.857	0.386
pilA/pilA1	Eikenella corrodens VA1	34.868	100	0.379