Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   N8A73_RS15830 Genome accession   NZ_CP109651
Coordinates   3061866..3062462 (+) Length   198 a.a.
NCBI ID   WP_024427684.1    Uniprot ID   -
Organism   Bacillus safensis strain LG01     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3056866..3067462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8A73_RS15810 opp1B 3057041..3057970 (-) 930 WP_061110116.1 nickel/cobalt ABC transporter permease -
  N8A73_RS15815 nikA 3057986..3059626 (-) 1641 WP_125586009.1 nickel ABC transporter substrate-binding protein -
  N8A73_RS15820 - 3059748..3060917 (-) 1170 WP_264316002.1 macrolide family glycosyltransferase -
  N8A73_RS15830 clpP 3061866..3062462 (+) 597 WP_024427684.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  N8A73_RS15835 - 3062518..3063096 (-) 579 WP_041107909.1 TIGR00730 family Rossman fold protein -
  N8A73_RS15840 - 3063234..3063575 (+) 342 WP_251232433.1 MazG-like family protein -
  N8A73_RS15845 - 3063602..3065224 (-) 1623 WP_034281022.1 SulP family inorganic anion transporter -
  N8A73_RS15850 - 3065262..3065843 (-) 582 WP_061110363.1 carbonic anhydrase -
  N8A73_RS15855 - 3066397..3067374 (+) 978 WP_034281023.1 D-glycerate dehydrogenase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21832.00 Da        Isoelectric Point: 4.6835

>NTDB_id=748763 N8A73_RS15830 WP_024427684.1 3061866..3062462(+) (clpP) [Bacillus safensis strain LG01]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ
PIEVIERDTDRDNFKTAEEALQYGLIDKVLTRNTEDQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=748763 N8A73_RS15830 WP_024427684.1 3061866..3062462(+) (clpP) [Bacillus safensis strain LG01]
ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA
CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTGTCACAGCTGCTTTTCTTAGAAGCTG
AAGATCCAGAAAAAGATATTTCTATCTACATTAACAGCCCTGGCGGTTCAATCACAGCTGGTATGGCCATTTACGATACG
ATGCAATTTATTAAACCAAAGGTATCAACTATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG
TGAAAAAGGTAAGCGTTATGCTCTTCCAAACAGTGAAGTCATGATTCACCAACCACTAGGCGGTGCCCAAGGTCAAGCAA
CTGAAATTGAAATTGCCGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG
CCAATTGAAGTCATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTCAATACGGACTCATTGA
CAAAGTCTTAACCCGTAATACAGAAGACCAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

93.939

100

0.939
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.539

96.465

0.652
  clpP Streptococcus thermophilus LMG 18311

58.549

97.475

0.571
  clpP Streptococcus thermophilus LMD-9

58.549

97.475

0.571
  clpP Lactococcus lactis subsp. cremoris KW2

56.186

97.98

0.551
  clpP Streptococcus pneumoniae Rx1

55.67

97.98

0.545
  clpP Streptococcus pneumoniae D39

55.67

97.98

0.545
  clpP Streptococcus pneumoniae R6

55.67

97.98

0.545
  clpP Streptococcus pneumoniae TIGR4

55.67

97.98

0.545
  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54
  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54
  clpP Streptococcus mutans UA159

54.639

97.98

0.535
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.124

97.98

0.53