NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OF800_RS02300	Genome accession	NZ_CP109636
Coordinates	438972..439571 (-)	Length	199 a.a.
NCBI ID	WP_003134020.1	Uniprot ID	-
Organism	Lactococcus garvieae strain Alexii-6_2
Function	degradation of ComX; degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 433972..444571

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OF800_RS02290 (OF800_02290)	-	434025..435248 (+)	1224	WP_003134018.1	FtsW/RodA/SpoVE family cell cycle protein	-
OF800_RS02295 (OF800_02295)	-	435449..438868 (+)	3420	WP_264308472.1	pyruvate carboxylase	-
OF800_RS02300 (OF800_02300)	clpP	438972..439571 (-)	600	WP_003134020.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OF800_RS02305 (OF800_02305)	-	439748..440125 (+)	378	WP_042217360.1	VOC family protein	-
OF800_RS02310 (OF800_02310)	-	440185..440715 (+)	531	WP_003134023.1	hypothetical protein	-
OF800_RS02315 (OF800_02315)	spx	440878..441276 (+)	399	WP_003134024.1	transcriptional regulator Spx	-
OF800_RS02320 (OF800_02320)	-	441413..442183 (+)	771	WP_165705595.1	TatD family hydrolase	-
OF800_RS02325 (OF800_02325)	rnmV	442183..442728 (+)	546	WP_042217356.1	ribonuclease M5	-
OF800_RS02330 (OF800_02330)	-	442725..443651 (+)	927	WP_003134028.1	ABC transporter ATP-binding protein	-
OF800_RS02335 (OF800_02335)	-	443644..444414 (+)	771	WP_165705596.1	ABC transporter permease	-

Sequence

Protein

Download Length: 199 a.a. Molecular weight: 21787.90 Da Isoelectric Point: 4.7242

                                >NTDB_id=748684 OF800_RS02300 WP_003134020.1 438972..439571(-) (clpP) [Lactococcus garvieae strain Alexii-6_2]

MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGQVEDGMANSIIAQLLFLDAQDSTKDIYLYINTPGGSVSAGLAIVD

TMNFIKSDVQTIVMGIAASMGTIIASSGTKGKRFMLPHAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRRTLEKILAEN

SGQSMEKVHADAERDNWMTAQETLDYGFIDEIMEANSLK

Nucleotide

Download Length: 600 bp

                                >NTDB_id=748684 OF800_RS02300 WP_003134020.1 438972..439571(-) (clpP) [Lactococcus garvieae strain Alexii-6_2]

ATGGGATATTTAGTACCTACTGTCATCGAGCAATCAAGCCGTGGTGAACGTGCATATGACATTTATAGCCGTCTACTGAA

AGACCGTATCATCATGTTGACAGGCCAAGTTGAGGATGGTATGGCCAACTCAATCATCGCACAACTCCTCTTCTTGGATG

CCCAAGACAGCACAAAGGACATTTACCTCTACATTAACACACCTGGTGGTTCTGTTTCTGCTGGACTTGCAATTGTCGAT

ACTATGAACTTCATCAAATCTGATGTTCAAACCATCGTTATGGGTATCGCTGCATCTATGGGTACAATCATTGCTTCTAG

TGGTACAAAAGGCAAACGTTTCATGTTGCCACATGCGGAATACATGATTCACCAACCTATGGGCGGTACTGGTGGTGGTA

CACAACAAACAGACATGGCTATCGCTGCGGAACATTTGCTCAAAACACGTCGTACTTTAGAAAAGATCTTGGCCGAAAAC

TCTGGACAATCTATGGAAAAAGTACATGCCGATGCAGAACGTGACAACTGGATGACAGCACAAGAAACATTAGATTATGG

TTTCATTGATGAAATCATGGAAGCCAATAGCTTGAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-195)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Streptococcus pneumoniae Rx1	89.796	98.492	0.884
clpP	Streptococcus pneumoniae D39	89.796	98.492	0.884
clpP	Streptococcus pneumoniae R6	89.796	98.492	0.884
clpP	Streptococcus pneumoniae TIGR4	89.796	98.492	0.884
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	87.94	100	0.879
clpP	Lactococcus lactis subsp. cremoris KW2	87.437	100	0.874
clpP	Streptococcus thermophilus LMG 18311	87.755	98.492	0.864
clpP	Streptococcus thermophilus LMD-9	87.755	98.492	0.864
clpP	Streptococcus pyogenes JRS4	84.184	98.492	0.829
clpP	Streptococcus pyogenes MGAS315	84.184	98.492	0.829
clpP	Streptococcus mutans UA159	84.184	98.492	0.829
clpP	Bacillus subtilis subsp. subtilis str. 168	58.421	95.477	0.558
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.995	96.985	0.553

Detailed information NTG0748684