Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OF401_RS05385 Genome accession   NZ_CP107717
Coordinates   1282499..1283761 (-) Length   420 a.a.
NCBI ID   WP_057671824.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain XY1-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1277499..1288761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OF401_RS05355 (OF401_05355) - 1277729..1279063 (+) 1335 WP_057671653.1 HAMP domain-containing sensor histidine kinase -
  OF401_RS05360 (OF401_05360) - 1279206..1279697 (-) 492 WP_011038220.1 GNAT family N-acetyltransferase -
  OF401_RS05365 (OF401_05365) - 1279694..1279984 (-) 291 WP_011038219.1 DUF1778 domain-containing protein -
  OF401_RS05370 (OF401_05370) - 1280059..1280460 (-) 402 WP_040940795.1 SymE family type I addiction module toxin -
  OF401_RS05375 (OF401_05375) coaE 1280992..1281615 (-) 624 WP_011038217.1 dephospho-CoA kinase -
  OF401_RS05380 (OF401_05380) - 1281629..1282492 (-) 864 WP_057671659.1 A24 family peptidase -
  OF401_RS05385 (OF401_05385) pilC 1282499..1283761 (-) 1263 WP_057671824.1 type II secretion system F family protein Machinery gene
  OF401_RS05390 (OF401_05390) pilA 1284103..1284531 (+) 429 WP_057671660.1 pilin Machinery gene
  OF401_RS05395 (OF401_05395) pilB 1284667..1286397 (+) 1731 WP_057671826.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OF401_RS05405 (OF401_05405) pilR 1286816..1288210 (-) 1395 WP_264252082.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46232.76 Da        Isoelectric Point: 10.2689

>NTDB_id=741580 OF401_RS05385 WP_057671824.1 1282499..1283761(-) (pilC) [Xanthomonas campestris pv. campestris strain XY1-1]
MSVVRNAIKKQVVDRSTGQQLQLFLWEGTDKRGIKMKGEQTARNMNMLRAELRRQGINPSVVKPKPKPLFGAAGKKITPK
DIAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISRHPVQFDELYRNLVRAGEGAGVL
ETVLDTVATYKENIEALKGKIKKALFYPAMVIAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVGASRFMVSYWW
IMLFVVAGSIIGFIFAYKRSPSMQHAMDRLILRVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNRVYE
DAVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGVV
VGGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=741580 OF401_RS05385 WP_057671824.1 1282499..1283761(-) (pilC) [Xanthomonas campestris pv. campestris strain XY1-1]
ATGTCTGTCGTACGCAATGCTATTAAGAAGCAAGTAGTCGACCGCAGTACTGGTCAACAGCTACAGCTGTTTCTTTGGGA
AGGAACCGATAAGCGCGGAATCAAGATGAAAGGCGAGCAGACTGCGCGCAACATGAATATGTTGCGCGCGGAACTTCGTC
GTCAAGGTATCAATCCGTCGGTAGTCAAACCCAAACCCAAGCCGCTGTTCGGTGCTGCAGGCAAGAAAATTACGCCAAAA
GACATTGCATTTTTCAGTCGCCAGATGGCGACTATGATGAAATCAGGGGTGCCGATTGTAAGCTCGCTTGAGATCATCGG
TGAGGGCCACAAAAATCCACGCATGAAAAAGATGGTGGGCCAAGTGAGAACGGATATCGAGGGCGGCTCATCTCTTTATG
AATCAATCAGCAGACATCCCGTGCAGTTTGATGAGCTCTACCGAAACCTCGTCCGAGCAGGTGAAGGTGCAGGCGTTCTA
GAGACAGTGCTAGATACAGTTGCCACTTACAAAGAAAACATAGAGGCCCTTAAGGGAAAGATTAAGAAGGCCCTGTTTTA
TCCAGCCATGGTGATTGCAGTCGCCCTTATTGTCAGCGCCATCCTGCTCATTTTTGTGGTCCCTCAATTCGAAGAGGTTT
TTAAGGGTTTCGGCGCCGAGTTACCCGCCTTCACCCAAATGATTGTAGGAGCATCACGCTTCATGGTGAGCTACTGGTGG
ATCATGCTGTTCGTTGTAGCAGGCTCCATCATTGGCTTCATCTTTGCTTATAAACGCTCACCAAGCATGCAGCATGCCAT
GGATAGGCTGATATTGAGAGTGCCTGTTATCGGGCAAATCATGCATAACAGCTCGATTGCGCGCTTCGCACGCACGACTG
CGGTTACCTTTAAAGCCGGAGTCCCATTAGTGGAAGCATTAGGCATTGTTGCTGGCGCCACCGGCAACCGCGTCTACGAA
GATGCGGTACTCCGTATGCGCGACGATGTATCTGTTGGCTACCCGGTCAACATGGCGATGAAACAGGTAAACCTGTTCCC
ACACATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCGGGCGCTCTTGATACCATGCTCTTCAAGGTGGCGGAATACT
TCGAGCAAGAGGTAAACAATGCAGTAGATGCACTTAGCAGCCTGCTCGAACCGATGATTATGGTCTTTATTGGCGTCGTC
GTAGGCGGTATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.408

94.524

0.514
  pilC Legionella pneumophila strain ERS1305867

52.882

95

0.502
  pilC Acinetobacter baylyi ADP1

51.244

95.714

0.49
  pilC Acinetobacter baumannii D1279779

49.628

95.952

0.476
  pilG Neisseria gonorrhoeae MS11

44.638

95.476

0.426
  pilG Neisseria meningitidis 44/76-A

44.14

95.476

0.421
  pilC Vibrio campbellii strain DS40M4

40.786

96.905

0.395
  pilC Vibrio cholerae strain A1552

40.75

95.238

0.388