Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | OF401_RS05385 | Genome accession | NZ_CP107717 |
| Coordinates | 1282499..1283761 (-) | Length | 420 a.a. |
| NCBI ID | WP_057671824.1 | Uniprot ID | - |
| Organism | Xanthomonas campestris pv. campestris strain XY1-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1237246..1293152 | 1282499..1283761 | within | 0 |
Gene organization within MGE regions
Location: 1237246..1293152
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OF401_RS05185 (OF401_05185) | - | 1237246..1239126 (+) | 1881 | WP_019237331.1 | integrase arm-type DNA-binding domain-containing protein | - |
| OF401_RS05190 (OF401_05190) | - | 1239311..1239730 (+) | 420 | WP_019237332.1 | hypothetical protein | - |
| OF401_RS05195 (OF401_05195) | - | 1239763..1240764 (+) | 1002 | WP_011038253.1 | XVIPCD domain-containing protein | - |
| OF401_RS05200 (OF401_05200) | - | 1240835..1241485 (-) | 651 | WP_011038252.1 | LysR substrate-binding domain-containing protein | - |
| OF401_RS05205 (OF401_05205) | - | 1241588..1241881 (+) | 294 | WP_011038251.1 | helix-turn-helix transcriptional regulator | - |
| OF401_RS05210 (OF401_05210) | - | 1241909..1242793 (-) | 885 | Protein_1005 | LysR family transcriptional regulator | - |
| OF401_RS05215 (OF401_05215) | - | 1243546..1247646 (-) | 4101 | WP_081020747.1 | HigA family addiction module antitoxin | - |
| OF401_RS05220 (OF401_05220) | - | 1248127..1251390 (-) | 3264 | WP_057671623.1 | ATP-binding protein | - |
| OF401_RS05225 (OF401_05225) | - | 1251481..1251612 (+) | 132 | Protein_1008 | IS5/IS1182 family transposase | - |
| OF401_RS05230 (OF401_05230) | - | 1252581..1254119 (+) | 1539 | WP_011038243.1 | MASE1 domain-containing protein | - |
| OF401_RS05235 (OF401_05235) | - | 1255141..1255788 (+) | 648 | WP_016848927.1 | hypothetical protein | - |
| OF401_RS05240 (OF401_05240) | - | 1255820..1256959 (+) | 1140 | WP_017117946.1 | type IV secretion system protein | - |
| OF401_RS05245 (OF401_05245) | - | 1257037..1257576 (+) | 540 | WP_225443876.1 | DUF4189 domain-containing protein | - |
| OF401_RS05250 (OF401_05250) | - | 1257974..1258504 (+) | 531 | WP_011038239.1 | hypothetical protein | - |
| OF401_RS05255 (OF401_05255) | - | 1258501..1259160 (+) | 660 | WP_057671625.1 | hypothetical protein | - |
| OF401_RS05260 (OF401_05260) | - | 1259157..1260539 (+) | 1383 | WP_057671628.1 | DUF6792 domain-containing protein | - |
| OF401_RS05265 (OF401_05265) | - | 1260643..1260992 (+) | 350 | Protein_1016 | type IV secretion system protein | - |
| OF401_RS05270 (OF401_05270) | - | 1261579..1262723 (+) | 1145 | WP_087942063.1 | IS3 family transposase | - |
| OF401_RS05275 (OF401_05275) | radC | 1263272..1263751 (+) | 480 | WP_075286085.1 | DNA repair protein RadC | - |
| OF401_RS05280 (OF401_05280) | - | 1263822..1264013 (+) | 192 | WP_221261829.1 | hypothetical protein | - |
| OF401_RS22205 | - | 1265791..1266216 (+) | 426 | Protein_1020 | XVIPCD domain-containing protein | - |
| OF401_RS05290 (OF401_05290) | - | 1266244..1266498 (-) | 255 | WP_057671639.1 | hypothetical protein | - |
| OF401_RS05295 (OF401_05295) | - | 1266765..1268360 (+) | 1596 | WP_192012501.1 | MobA/MobL family protein | - |
| OF401_RS05300 (OF401_05300) | - | 1268433..1268801 (-) | 369 | WP_225443877.1 | transcriptional regulator | - |
| OF401_RS05305 (OF401_05305) | - | 1268809..1269090 (-) | 282 | WP_011348355.1 | DUF6516 family protein | - |
| OF401_RS05310 (OF401_05310) | - | 1269156..1269497 (-) | 342 | WP_081020748.1 | hypothetical protein | - |
| OF401_RS05315 (OF401_05315) | - | 1270223..1270573 (+) | 351 | WP_225443878.1 | hypothetical protein | - |
| OF401_RS05320 (OF401_05320) | - | 1270873..1271103 (-) | 231 | WP_157382680.1 | hypothetical protein | - |
| OF401_RS05325 (OF401_05325) | - | 1271167..1271313 (+) | 147 | WP_040940792.1 | hypothetical protein | - |
| OF401_RS05330 (OF401_05330) | - | 1271498..1271893 (+) | 396 | WP_042594933.1 | hypothetical protein | - |
| OF401_RS05335 (OF401_05335) | - | 1271984..1272376 (+) | 393 | WP_012437593.1 | H-NS family nucleoid-associated regulatory protein | - |
| OF401_RS05340 (OF401_05340) | glgX | 1272911..1275040 (-) | 2130 | WP_057671651.1 | glycogen debranching protein GlgX | - |
| OF401_RS05345 (OF401_05345) | rimK | 1275534..1276409 (+) | 876 | WP_016945000.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
| OF401_RS05350 (OF401_05350) | - | 1277059..1277736 (+) | 678 | WP_003490678.1 | response regulator transcription factor | - |
| OF401_RS05355 (OF401_05355) | - | 1277729..1279063 (+) | 1335 | WP_057671653.1 | HAMP domain-containing sensor histidine kinase | - |
| OF401_RS05360 (OF401_05360) | - | 1279206..1279697 (-) | 492 | WP_011038220.1 | GNAT family N-acetyltransferase | - |
| OF401_RS05365 (OF401_05365) | - | 1279694..1279984 (-) | 291 | WP_011038219.1 | DUF1778 domain-containing protein | - |
| OF401_RS05370 (OF401_05370) | - | 1280059..1280460 (-) | 402 | WP_040940795.1 | SymE family type I addiction module toxin | - |
| OF401_RS05375 (OF401_05375) | coaE | 1280992..1281615 (-) | 624 | WP_011038217.1 | dephospho-CoA kinase | - |
| OF401_RS05380 (OF401_05380) | - | 1281629..1282492 (-) | 864 | WP_057671659.1 | A24 family peptidase | - |
| OF401_RS05385 (OF401_05385) | pilC | 1282499..1283761 (-) | 1263 | WP_057671824.1 | type II secretion system F family protein | Machinery gene |
| OF401_RS05390 (OF401_05390) | pilA | 1284103..1284531 (+) | 429 | WP_057671660.1 | pilin | Machinery gene |
| OF401_RS05395 (OF401_05395) | pilB | 1284667..1286397 (+) | 1731 | WP_057671826.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| OF401_RS05405 (OF401_05405) | pilR | 1286816..1288210 (-) | 1395 | WP_264252082.1 | sigma-54 dependent transcriptional regulator | Regulator |
| OF401_RS05410 (OF401_05410) | - | 1288419..1290029 (-) | 1611 | WP_057671664.1 | HAMP domain-containing sensor histidine kinase | - |
| OF401_RS05415 (OF401_05415) | sucC | 1290263..1291432 (+) | 1170 | WP_011038209.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| OF401_RS05420 (OF401_05420) | sucD | 1291457..1292332 (+) | 876 | WP_057671668.1 | succinate--CoA ligase subunit alpha | - |
| OF401_RS05425 (OF401_05425) | - | 1292436..1292846 (+) | 411 | WP_029217117.1 | DNA-binding protein | - |
| OF401_RS05430 (OF401_05430) | - | 1292850..1293152 (+) | 303 | WP_011038207.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
Sequence
Protein
Download Length: 420 a.a. Molecular weight: 46232.76 Da Isoelectric Point: 10.2689
>NTDB_id=741580 OF401_RS05385 WP_057671824.1 1282499..1283761(-) (pilC) [Xanthomonas campestris pv. campestris strain XY1-1]
MSVVRNAIKKQVVDRSTGQQLQLFLWEGTDKRGIKMKGEQTARNMNMLRAELRRQGINPSVVKPKPKPLFGAAGKKITPK
DIAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISRHPVQFDELYRNLVRAGEGAGVL
ETVLDTVATYKENIEALKGKIKKALFYPAMVIAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVGASRFMVSYWW
IMLFVVAGSIIGFIFAYKRSPSMQHAMDRLILRVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNRVYE
DAVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGVV
VGGMVIGMYLPIFKLGAVVG
MSVVRNAIKKQVVDRSTGQQLQLFLWEGTDKRGIKMKGEQTARNMNMLRAELRRQGINPSVVKPKPKPLFGAAGKKITPK
DIAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISRHPVQFDELYRNLVRAGEGAGVL
ETVLDTVATYKENIEALKGKIKKALFYPAMVIAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVGASRFMVSYWW
IMLFVVAGSIIGFIFAYKRSPSMQHAMDRLILRVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNRVYE
DAVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGVV
VGGMVIGMYLPIFKLGAVVG
Nucleotide
Download Length: 1263 bp
>NTDB_id=741580 OF401_RS05385 WP_057671824.1 1282499..1283761(-) (pilC) [Xanthomonas campestris pv. campestris strain XY1-1]
ATGTCTGTCGTACGCAATGCTATTAAGAAGCAAGTAGTCGACCGCAGTACTGGTCAACAGCTACAGCTGTTTCTTTGGGA
AGGAACCGATAAGCGCGGAATCAAGATGAAAGGCGAGCAGACTGCGCGCAACATGAATATGTTGCGCGCGGAACTTCGTC
GTCAAGGTATCAATCCGTCGGTAGTCAAACCCAAACCCAAGCCGCTGTTCGGTGCTGCAGGCAAGAAAATTACGCCAAAA
GACATTGCATTTTTCAGTCGCCAGATGGCGACTATGATGAAATCAGGGGTGCCGATTGTAAGCTCGCTTGAGATCATCGG
TGAGGGCCACAAAAATCCACGCATGAAAAAGATGGTGGGCCAAGTGAGAACGGATATCGAGGGCGGCTCATCTCTTTATG
AATCAATCAGCAGACATCCCGTGCAGTTTGATGAGCTCTACCGAAACCTCGTCCGAGCAGGTGAAGGTGCAGGCGTTCTA
GAGACAGTGCTAGATACAGTTGCCACTTACAAAGAAAACATAGAGGCCCTTAAGGGAAAGATTAAGAAGGCCCTGTTTTA
TCCAGCCATGGTGATTGCAGTCGCCCTTATTGTCAGCGCCATCCTGCTCATTTTTGTGGTCCCTCAATTCGAAGAGGTTT
TTAAGGGTTTCGGCGCCGAGTTACCCGCCTTCACCCAAATGATTGTAGGAGCATCACGCTTCATGGTGAGCTACTGGTGG
ATCATGCTGTTCGTTGTAGCAGGCTCCATCATTGGCTTCATCTTTGCTTATAAACGCTCACCAAGCATGCAGCATGCCAT
GGATAGGCTGATATTGAGAGTGCCTGTTATCGGGCAAATCATGCATAACAGCTCGATTGCGCGCTTCGCACGCACGACTG
CGGTTACCTTTAAAGCCGGAGTCCCATTAGTGGAAGCATTAGGCATTGTTGCTGGCGCCACCGGCAACCGCGTCTACGAA
GATGCGGTACTCCGTATGCGCGACGATGTATCTGTTGGCTACCCGGTCAACATGGCGATGAAACAGGTAAACCTGTTCCC
ACACATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCGGGCGCTCTTGATACCATGCTCTTCAAGGTGGCGGAATACT
TCGAGCAAGAGGTAAACAATGCAGTAGATGCACTTAGCAGCCTGCTCGAACCGATGATTATGGTCTTTATTGGCGTCGTC
GTAGGCGGTATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA
ATGTCTGTCGTACGCAATGCTATTAAGAAGCAAGTAGTCGACCGCAGTACTGGTCAACAGCTACAGCTGTTTCTTTGGGA
AGGAACCGATAAGCGCGGAATCAAGATGAAAGGCGAGCAGACTGCGCGCAACATGAATATGTTGCGCGCGGAACTTCGTC
GTCAAGGTATCAATCCGTCGGTAGTCAAACCCAAACCCAAGCCGCTGTTCGGTGCTGCAGGCAAGAAAATTACGCCAAAA
GACATTGCATTTTTCAGTCGCCAGATGGCGACTATGATGAAATCAGGGGTGCCGATTGTAAGCTCGCTTGAGATCATCGG
TGAGGGCCACAAAAATCCACGCATGAAAAAGATGGTGGGCCAAGTGAGAACGGATATCGAGGGCGGCTCATCTCTTTATG
AATCAATCAGCAGACATCCCGTGCAGTTTGATGAGCTCTACCGAAACCTCGTCCGAGCAGGTGAAGGTGCAGGCGTTCTA
GAGACAGTGCTAGATACAGTTGCCACTTACAAAGAAAACATAGAGGCCCTTAAGGGAAAGATTAAGAAGGCCCTGTTTTA
TCCAGCCATGGTGATTGCAGTCGCCCTTATTGTCAGCGCCATCCTGCTCATTTTTGTGGTCCCTCAATTCGAAGAGGTTT
TTAAGGGTTTCGGCGCCGAGTTACCCGCCTTCACCCAAATGATTGTAGGAGCATCACGCTTCATGGTGAGCTACTGGTGG
ATCATGCTGTTCGTTGTAGCAGGCTCCATCATTGGCTTCATCTTTGCTTATAAACGCTCACCAAGCATGCAGCATGCCAT
GGATAGGCTGATATTGAGAGTGCCTGTTATCGGGCAAATCATGCATAACAGCTCGATTGCGCGCTTCGCACGCACGACTG
CGGTTACCTTTAAAGCCGGAGTCCCATTAGTGGAAGCATTAGGCATTGTTGCTGGCGCCACCGGCAACCGCGTCTACGAA
GATGCGGTACTCCGTATGCGCGACGATGTATCTGTTGGCTACCCGGTCAACATGGCGATGAAACAGGTAAACCTGTTCCC
ACACATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCGGGCGCTCTTGATACCATGCTCTTCAAGGTGGCGGAATACT
TCGAGCAAGAGGTAAACAATGCAGTAGATGCACTTAGCAGCCTGCTCGAACCGATGATTATGGTCTTTATTGGCGTCGTC
GTAGGCGGTATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
54.408 |
94.524 |
0.514 |
| pilC | Legionella pneumophila strain ERS1305867 |
52.882 |
95 |
0.502 |
| pilC | Acinetobacter baylyi ADP1 |
51.244 |
95.714 |
0.49 |
| pilC | Acinetobacter baumannii D1279779 |
49.628 |
95.952 |
0.476 |
| pilG | Neisseria gonorrhoeae MS11 |
44.638 |
95.476 |
0.426 |
| pilG | Neisseria meningitidis 44/76-A |
44.14 |
95.476 |
0.421 |
| pilC | Vibrio campbellii strain DS40M4 |
40.786 |
96.905 |
0.395 |
| pilC | Vibrio cholerae strain A1552 |
40.75 |
95.238 |
0.388 |