Detailed information NTG0741393

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: OIO76_RS09120
• Genome accession: NZ_CP107608
• Coordinates: 1867021..1867722 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594580.1
• Uniprot ID: A0A836YMN8
• Organism: Acinetobacter baumannii strain 1326924-2
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1862021..1872722

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OIO76_RS09085 (OIO76_09090)	kdsB	1862544..1863305 (+)	762	WP_000680701.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
OIO76_RS09090 (OIO76_09095)	-	1863317..1864297 (+)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
OIO76_RS09095 (OIO76_09100)	-	1864309..1864650 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
OIO76_RS09100 (OIO76_09105)	-	1864668..1865441 (+)	774	WP_000497298.1	TatD family hydrolase	-
OIO76_RS09105 (OIO76_09110)	-	1865479..1866087 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
OIO76_RS09110 (OIO76_09115)	-	1866097..1866651 (+)	555	WP_000841367.1	type II secretion system protein	-
OIO76_RS09115 (OIO76_09120)	xcpV	1866641..1867021 (+)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
OIO76_RS09120 (OIO76_09125)	xcpW	1867021..1867722 (+)	702	WP_000594580.1	type II secretion system minor pseudopilin GspJ	Machinery gene
OIO76_RS09125 (OIO76_09130)	gspK	1867722..1868681 (+)	960	WP_031960447.1	type II secretion system minor pseudopilin GspK	-
OIO76_RS09130 (OIO76_09135)	-	1868911..1869507 (+)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
OIO76_RS09135 (OIO76_09140)	ung	1869558..1870271 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
OIO76_RS09140 (OIO76_09145)	-	1870268..1871392 (+)	1125	WP_109067466.1	enoyl-CoA hydratase/isomerase family protein	-
OIO76_RS09145 (OIO76_09150)	tadA	1871399..1871902 (+)	504	WP_031960449.1	tRNA adenosine(34) deaminase TadA	-
OIO76_RS09150 (OIO76_09155)	-	1871972..1872415 (+)	444	WP_031960450.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26673.64 Da
• Isoelectric Point: 9.5501

>NTDB_id=741393 OIO76_RS09120 WP_000594580.1 1867021..1867722(+) (xcpW) [Acinetobacter baumannii strain 1326924-2]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=741393 OIO76_RS09120 WP_000594580.1 1867021..1867722(+) (xcpW) [Acinetobacter baumannii strain 1326924-2]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAAATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A836YMN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.712	100	0.987