Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OEG79_RS18560 Genome accession   NZ_CP107549
Coordinates   3912639..3914759 (-) Length   706 a.a.
NCBI ID   WP_264146413.1    Uniprot ID   -
Organism   Pseudomonas sp. Z8(2022)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3907639..3919759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEG79_RS18545 (OEG79_18545) - 3909375..3910949 (-) 1575 WP_264146410.1 AAA family ATPase -
  OEG79_RS18550 (OEG79_18550) aroB 3910960..3912063 (-) 1104 WP_264146411.1 3-dehydroquinate synthase -
  OEG79_RS18555 (OEG79_18555) aroK 3912115..3912633 (-) 519 WP_264146412.1 shikimate kinase AroK -
  OEG79_RS18560 (OEG79_18560) pilQ 3912639..3914759 (-) 2121 WP_264146413.1 type IV pilus secretin PilQ Machinery gene
  OEG79_RS18565 (OEG79_18565) pilP 3914815..3915339 (-) 525 WP_264146414.1 type 4a pilus biogenesis lipoprotein PilP -
  OEG79_RS18570 (OEG79_18570) pilO 3915339..3915959 (-) 621 WP_264146415.1 type 4a pilus biogenesis protein PilO -
  OEG79_RS18575 (OEG79_18575) pilN 3915956..3916528 (-) 573 WP_264146416.1 type 4a pilus biogenesis protein PilN -
  OEG79_RS18580 (OEG79_18580) pilM 3916528..3917592 (-) 1065 WP_264146417.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 706 a.a.        Molecular weight: 76100.25 Da        Isoelectric Point: 4.7650

>NTDB_id=740592 OEG79_RS18560 WP_264146413.1 3912639..3914759(-) (pilQ) [Pseudomonas sp. Z8(2022)]
MNGSLSRLSVALMAALLSPSILAANLQGLDVASLPGDRVELKLSFDEPVTAPRGYTIEQPARIALDLPGVANKLGSKNRE
LGVGNARSVTIVEAKDRTRLIVNLNNLAPYSTRVEGSDLFVLVGESSAASARPNAAATTAVAQPAPKKSYGLQPKSISNI
DFQRGEQGEGNVVITLSDASVSPDIQEQGGKIRLDFAKTELPESLRVRLDVKDFATPVQFVSATGGADKTSILIEPVGIY
DYLAYQTENKLTLSVKPLSQDDVERRNAERFAYTGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVAGNITLRLQNVP
WDQALDLVLKTKGLDKRQVGNVLLVAPADEIAARERQELESQKQIAELAPLRRELIQVNYAKAADMAKLFQSVTSADGAS
SDVRGSVTVDERTNSIIAYQTQDRLDELRRIIAQLDIPVRQVMIEARIVEANVDYDKALGVRWGGATRRGNWSVYGKDGA
TSFDNDSGQVYLPGTDTVGNVSLQDGVAPVPFVDMGVLGSTSGIGIGFLTDNVTLDLQLSAMEKTGNGEIVSQPKVVTSD
KETAKILKGQEVPYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIMEVKVTKDAPDFARALNGVPPINKNEVNAKVLV
NDGETIVIGGVFSNTQTKGVEKVPFLGDLPFLGRVFRRDIVSDNKAELLVFITPRIMNNQAIAVNR

Nucleotide


Download         Length: 2121 bp        

>NTDB_id=740592 OEG79_RS18560 WP_264146413.1 3912639..3914759(-) (pilQ) [Pseudomonas sp. Z8(2022)]
ATGAATGGCTCTCTTTCGCGTCTTAGCGTCGCCCTGATGGCGGCACTGCTGTCGCCCTCCATATTGGCGGCCAATCTACA
AGGTCTTGATGTGGCCAGCCTGCCCGGCGACAGGGTTGAGCTGAAGCTTTCCTTCGATGAGCCGGTGACTGCTCCGCGAG
GCTATACGATCGAGCAGCCTGCCCGAATCGCTCTGGATCTGCCGGGGGTGGCCAACAAGCTTGGGTCGAAAAACCGGGAG
CTTGGCGTAGGCAACGCGCGCAGCGTTACCATCGTCGAGGCCAAGGACCGTACTCGCCTGATTGTCAATCTGAATAATCT
GGCACCTTATAGCACTCGAGTTGAAGGCAGTGACCTGTTCGTTCTGGTTGGTGAGTCGTCTGCTGCAAGTGCTCGTCCAA
ATGCTGCGGCCACGACTGCCGTTGCCCAGCCGGCGCCCAAGAAATCCTATGGCTTGCAACCGAAGTCCATCAGCAATATA
GACTTTCAGCGTGGCGAGCAGGGCGAGGGCAATGTTGTCATCACGCTTTCTGATGCGTCTGTAAGCCCGGACATCCAAGA
GCAGGGCGGTAAAATCCGGCTTGATTTCGCCAAGACCGAACTGCCCGAGTCTCTGCGGGTTCGCCTTGATGTGAAGGACT
TCGCGACTCCGGTTCAGTTTGTAAGCGCAACAGGCGGTGCGGACAAGACCAGCATCCTGATTGAACCGGTCGGTATATAT
GATTACCTGGCATATCAGACTGAAAACAAGCTTACTCTGAGTGTGAAGCCGCTGAGTCAGGACGATGTTGAGCGTCGTAA
TGCTGAGCGTTTTGCATATACCGGGGAGAAGCTGTCGCTGAACTTCCAGGATATCGATGTACGATCCGTTCTGCAGTTGA
TTGCTGATTTTACCGATCTGAATCTGGTAGCCAGTGATACTGTCGCGGGCAACATCACACTGCGTCTGCAGAATGTGCCT
TGGGATCAGGCGCTGGACCTGGTGCTGAAGACCAAAGGGCTCGATAAGCGCCAGGTTGGTAATGTTCTCTTGGTGGCGCC
AGCGGACGAAATTGCTGCTCGCGAGCGTCAGGAGTTGGAATCGCAGAAGCAGATTGCCGAGCTCGCTCCCCTGCGTCGTG
AGTTGATTCAGGTGAATTATGCGAAGGCTGCTGATATGGCGAAGCTGTTTCAGTCGGTCACAAGTGCTGATGGTGCATCA
TCAGATGTCCGTGGTTCTGTAACGGTTGATGAGCGTACCAACAGCATCATTGCTTACCAGACGCAAGATCGTCTGGATGA
GCTGCGGCGTATCATTGCCCAGCTTGACATTCCTGTGCGTCAGGTAATGATCGAGGCGCGTATCGTCGAGGCCAACGTGG
ATTATGACAAGGCCTTGGGCGTGCGTTGGGGCGGGGCAACTCGTCGCGGAAACTGGAGCGTTTACGGCAAGGACGGCGCG
ACATCCTTCGATAATGATAGCGGGCAGGTCTATTTGCCGGGCACCGATACGGTAGGCAACGTTTCGCTGCAGGATGGTGT
GGCTCCTGTGCCCTTCGTCGATATGGGGGTTCTCGGCAGTACTTCGGGTATAGGCATCGGCTTCCTTACCGACAATGTGA
CGCTGGATCTACAGCTGTCGGCCATGGAGAAGACCGGTAATGGCGAGATTGTCTCCCAGCCCAAGGTTGTTACTTCGGAC
AAAGAGACGGCGAAAATCTTGAAGGGGCAGGAAGTTCCCTATCAGGAAGCCAGCTCTAGTGGCGCGACCAGTACATCCTT
CAAAGAGGCGGCTCTCTCCCTGGAGGTTACTCCTCAGATCACTCCGGATAATCGCATCATCATGGAGGTGAAGGTAACCA
AGGATGCGCCAGATTTCGCCCGGGCCCTGAACGGGGTGCCGCCGATCAACAAGAACGAAGTCAATGCCAAGGTACTGGTC
AATGATGGCGAGACCATTGTGATCGGCGGGGTGTTCTCCAACACCCAGACCAAGGGTGTAGAGAAAGTCCCATTCCTTGG
TGACCTGCCATTCCTGGGCCGAGTATTCCGTCGTGACATCGTCAGCGACAACAAGGCCGAGTTGCTGGTTTTCATCACTC
CGCGCATCATGAACAACCAAGCCATTGCCGTGAATCGATGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(541-697)

Secretin and TonB N terminus short domain (STN)

(301-347)

AMIN domain (AMIN)

(38-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

76.19

100

0.771
  pilQ Acinetobacter baumannii strain A118

40.655

100

0.422
  pilQ Acinetobacter baumannii D1279779

40.655

100

0.422
  comQ Acinetobacter baylyi ADP1

41.797

99.292

0.415
  pilQ Legionella pneumophila strain ERS1305867

38.201

96.034

0.367
  pilQ Legionella pneumophila strain Lp02

38.053

96.034

0.365