Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OFU58_RS01695 Genome accession   NZ_CP107289
Coordinates   358226..360376 (+) Length   716 a.a.
NCBI ID   WP_130119886.1    Uniprot ID   -
Organism   Acinetobacter pittii strain BM4623     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 353226..365376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFU58_RS01675 (OFU58_01675) pilM 355177..356235 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  OFU58_RS01680 (OFU58_01680) pilN 356235..356876 (+) 642 WP_032004890.1 PilN domain-containing protein Machinery gene
  OFU58_RS01685 (OFU58_01685) pilO 356873..357625 (+) 753 WP_280586966.1 type 4a pilus biogenesis protein PilO Machinery gene
  OFU58_RS01690 (OFU58_01690) pilP 357636..358163 (+) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  OFU58_RS01695 (OFU58_01695) pilQ 358226..360376 (+) 2151 WP_130119886.1 type IV pilus secretin PilQ family protein Machinery gene
  OFU58_RS01700 (OFU58_01700) aroK 360388..360957 (+) 570 WP_002116987.1 shikimate kinase AroK -
  OFU58_RS01705 (OFU58_01705) aroB 360986..362068 (+) 1083 WP_130119885.1 3-dehydroquinate synthase -
  OFU58_RS01710 (OFU58_01710) - 362085..362954 (+) 870 WP_101664430.1 hypothetical protein -

Sequence

Protein


Download         Length: 716 a.a.        Molecular weight: 77559.91 Da        Isoelectric Point: 5.4756

>NTDB_id=739324 OFU58_RS01695 WP_130119886.1 358226..360376(+) (pilQ) [Acinetobacter pittii strain BM4623]
MNHVFRQFSMGAVAIAIMQVASAQVSMTNIVPMQIAGQGTEIRVIFNGLPPQPQAYQLENPSRLILDFNKAQQNLIQSKV
AIGTNEASSVDVSSDDQRSRLTVNLKEAGAFTTRIEGNTFILKINSTQAVAKPVSASAMQTQGVSNIGFQRGSQGEGLIV
IDLLGGNTPVDVQQQGSKVVVRTLGSKIPTHLAKRLNVNDFATPVSTIESYNEKGNGVITIQSTGSYEYMAYQAENKLTI
SLKRPQDKNVTSLYKTPNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEEEEAKAVAQSVKLAPLQTEYIQLKYAQAQDIMSLITQGSNNSNGMQRTSDGGNSTSTNL
NTGVDSLGNNVGSLLSPRGTITQDDRTNTLIINDTAQSIDQIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGIL
SQGITNNNNLLVGGSDTTLWNLREPDDDGKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADGYGEVI
STPKVMTADKQPAKVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVSGAAPNGELIL
NKNNIKTNVLVNNGETVILGGVFEQTTLNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLVRNH

Nucleotide


Download         Length: 2151 bp        

>NTDB_id=739324 OFU58_RS01695 WP_130119886.1 358226..360376(+) (pilQ) [Acinetobacter pittii strain BM4623]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGAGCTGTGGCGATTGCAATTATGCAGGTTGCATCTGCACAGGTCAGCAT
GACTAATATTGTACCGATGCAAATAGCGGGTCAGGGAACAGAAATTCGAGTGATATTTAATGGCTTGCCACCGCAACCAC
AGGCCTATCAGCTTGAAAATCCTTCACGTTTGATTTTAGATTTTAATAAAGCGCAGCAGAATTTAATACAGTCAAAAGTA
GCGATTGGAACGAATGAAGCGAGTTCGGTCGATGTAAGCTCCGATGATCAGCGTTCACGTTTAACTGTAAATTTGAAAGA
GGCAGGTGCTTTTACTACTCGTATTGAAGGCAACACTTTTATTTTAAAGATTAATTCTACGCAAGCTGTAGCTAAACCTG
TATCAGCAAGTGCAATGCAAACCCAAGGTGTTTCAAACATCGGCTTCCAACGCGGTAGTCAAGGGGAAGGCCTTATCGTT
ATTGACCTGTTGGGAGGTAATACCCCTGTTGATGTGCAACAACAAGGTAGCAAAGTTGTAGTAAGAACGTTAGGCTCTAA
AATTCCTACACATCTAGCTAAACGCTTAAATGTAAATGATTTTGCGACGCCTGTTTCGACCATTGAATCTTATAATGAAA
AAGGCAATGGCGTTATTACGATTCAATCTACTGGTAGCTATGAATATATGGCTTATCAGGCAGAAAATAAATTAACCATT
AGCCTCAAGCGTCCGCAGGACAAAAATGTAACCTCTTTATATAAGACGCCTAATTACTCTGGTAATAAGCTTTCTCTCGA
TTTTCAAGATATTGAAGTTCGTCGCGTTTTACAGTTACTTGCTGATTTTACTGGTATTAATATGGTCGCGGCTGATAGTG
TGCAAGGTAATATCACTTTGCGTTTAAAAGATGTACCATGGGATCAAGCACTTGATATTATTTTAAAAACTAAAAATTTA
GATAAACGCAGAAATGGGAATGTAATTTGGATTGCTCCAGTTGCGGAACTGATCAAGGCTGAAGAAGAAGAAGCAAAAGC
TGTTGCACAGAGCGTGAAATTAGCCCCATTACAAACTGAGTATATTCAACTTAAATATGCGCAAGCTCAGGATATTATGA
GTTTAATTACTCAAGGCTCAAATAATAGCAATGGTATGCAGCGCACATCTGATGGTGGAAATTCTACATCTACTAATTTA
AATACTGGTGTTGATAGTTTAGGTAATAATGTAGGAAGTTTATTGAGTCCCCGTGGAACAATTACTCAAGATGATCGTAC
CAATACCTTAATTATTAATGATACGGCTCAGTCGATTGATCAAATTCGTAAAATGATTGATCTGTTGGATGTACAAGTTA
AACAGGTTATGGTTGAGGCGCGAATTGTAAGAGCATCTACTTCTTTTACCAAAGAGCTCGGTGTTAAATGGGGTATATTA
TCGCAAGGGATTACCAACAATAATAATTTGTTAGTTGGTGGTAGTGATACAACGCTTTGGAATTTAAGAGAACCAGATGA
CGACGGGAAATACACGATTGAGCGGCCAGATAATTTAAACGTTGATTTAGGTGTAACCAATCCGGCTGGAAGTATTGCCT
TCGGCTTGATTAGTATGTCTGATTTTATGCTTGATCTTGAACTTTCTGCATTACAAGCTGATGGTTATGGTGAGGTTATT
TCTACCCCTAAAGTAATGACTGCAGATAAACAACCTGCAAAAGTTGCAACAGGTCAACAGGTCCCATATCAAACCACAAC
TAATTCTGCTGCGGGTGCCACAGCAAGTACATCATTTAAAGATGCACTTTTAAGTTTGGATGTTACTCCGAGCATCACGC
CTGATGGTAAAATTCAAATGAAATTGGATATTTCAAAGGATTCGGTTTCGGGTGCGGCTCCTAATGGTGAATTGATCCTA
AATAAAAATAATATCAAGACAAATGTGTTGGTGAATAATGGCGAAACGGTCATTCTTGGTGGTGTTTTTGAGCAGACAAC
CCTTAACTCTCAAACCAAGGTTCCTTTCTTTGGAGACATTCCTGTCGTTGGGCGTTTATTTAGAAAAGATGTGAAATCTG
ATGATAAGCAAGAGTTACTGATTTTCGTTACGCCACGAATTGTTAATGACACTTTGGTGAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(360-455)

AMIN domain (AMIN)

(40-118)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II and III secretion system protein (Secretin)

(550-708)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

91.262

100

0.919
  pilQ Acinetobacter baumannii strain A118

91.123

100

0.918
  comQ Acinetobacter baylyi ADP1

75.487

100

0.757
  pilQ Pseudomonas aeruginosa PAK

39.833

100

0.399