Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   OFU58_RS01685 Genome accession   NZ_CP107289
Coordinates   356873..357625 (+) Length   250 a.a.
NCBI ID   WP_280586966.1    Uniprot ID   -
Organism   Acinetobacter pittii strain BM4623     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 351873..362625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFU58_RS01670 (OFU58_01670) ponA 352454..355015 (-) 2562 WP_005804528.1 penicillin-binding protein PBP1a -
  OFU58_RS01675 (OFU58_01675) pilM 355177..356235 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  OFU58_RS01680 (OFU58_01680) pilN 356235..356876 (+) 642 WP_032004890.1 PilN domain-containing protein Machinery gene
  OFU58_RS01685 (OFU58_01685) pilO 356873..357625 (+) 753 WP_280586966.1 type 4a pilus biogenesis protein PilO Machinery gene
  OFU58_RS01690 (OFU58_01690) pilP 357636..358163 (+) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  OFU58_RS01695 (OFU58_01695) pilQ 358226..360376 (+) 2151 WP_130119886.1 type IV pilus secretin PilQ family protein Machinery gene
  OFU58_RS01700 (OFU58_01700) aroK 360388..360957 (+) 570 WP_002116987.1 shikimate kinase AroK -
  OFU58_RS01705 (OFU58_01705) aroB 360986..362068 (+) 1083 WP_130119885.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 28232.05 Da        Isoelectric Point: 4.7867

>NTDB_id=739322 OFU58_RS01685 WP_280586966.1 356873..357625(+) (pilO) [Acinetobacter pittii strain BM4623]
MSPDELHELSLEEAPSKKKKITLEKFLQQFNTLDMNSYGSWPLSVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITIEATGDYHAFGAFVSSIAALPRIVTMHDFIVEAAPVKDGKSDIPVLNYSIKAKTYRYMGAVENPEHQEKNASASSVAS
DSSTANTQPK

Nucleotide


Download         Length: 753 bp        

>NTDB_id=739322 OFU58_RS01685 WP_280586966.1 356873..357625(+) (pilO) [Acinetobacter pittii strain BM4623]
ATGAGTCCTGATGAACTTCATGAGCTGTCTTTAGAAGAAGCTCCATCTAAGAAAAAAAAGATCACCTTAGAAAAATTTCT
TCAGCAATTTAACACGCTCGACATGAACAGTTATGGTAGCTGGCCATTATCTGTGAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTATTGGCTTTGGGGTATTTTGTTGCTATTCAGCCAAAGCTACAAGCAATTGATAATGCTCAAGCACAAGAA
AGTAATTTATTAAATGAGTTTCGAGAAAAAGACTCAAAATTACGCAACTTGCAGCAATACCAGCTTCAACTTCAAGAGAT
GCAAGCCAACTTCAATCAGCAGTTAGAACAATTGCCAAAAGAAACTGAAATTCCAAGTTTAGTTGAAGATATTAACTTAA
CGGGGGTGAATTCTGGTCTGAAGTTTAAAAATATCCGCTTAGAAGATGAAGTGAAGCAGGAAATTTTTATTGAACAGCCT
ATTACTATCGAGGCAACTGGGGATTATCACGCTTTCGGTGCTTTTGTTAGCAGTATTGCGGCATTACCACGTATTGTGAC
GATGCATGATTTTATTGTTGAAGCTGCTCCTGTTAAGGATGGTAAATCAGATATTCCTGTGCTTAATTATTCTATCAAAG
CAAAAACTTATCGCTATATGGGTGCTGTAGAAAATCCTGAACATCAGGAAAAAAATGCTTCGGCTTCCTCGGTAGCATCT
GATTCTTCTACTGCTAACACACAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

83.2

100

0.832
  comO Acinetobacter baylyi ADP1

68.571

98

0.672