Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   OFU58_RS01690 Genome accession   NZ_CP107289
Coordinates   357636..358163 (+) Length   175 a.a.
NCBI ID   WP_002116864.1    Uniprot ID   A0AAN4MGG3
Organism   Acinetobacter pittii strain BM4623     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 352636..363163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFU58_RS01675 (OFU58_01675) pilM 355177..356235 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  OFU58_RS01680 (OFU58_01680) pilN 356235..356876 (+) 642 WP_032004890.1 PilN domain-containing protein Machinery gene
  OFU58_RS01685 (OFU58_01685) pilO 356873..357625 (+) 753 WP_280586966.1 type 4a pilus biogenesis protein PilO Machinery gene
  OFU58_RS01690 (OFU58_01690) pilP 357636..358163 (+) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  OFU58_RS01695 (OFU58_01695) pilQ 358226..360376 (+) 2151 WP_130119886.1 type IV pilus secretin PilQ family protein Machinery gene
  OFU58_RS01700 (OFU58_01700) aroK 360388..360957 (+) 570 WP_002116987.1 shikimate kinase AroK -
  OFU58_RS01705 (OFU58_01705) aroB 360986..362068 (+) 1083 WP_130119885.1 3-dehydroquinate synthase -
  OFU58_RS01710 (OFU58_01710) - 362085..362954 (+) 870 WP_101664430.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19265.32 Da        Isoelectric Point: 9.0270

>NTDB_id=739323 OFU58_RS01690 WP_002116864.1 357636..358163(+) (pilP) [Acinetobacter pittii strain BM4623]
MKLKQFSLSILACLALAGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSMRNSRGQVMALIQTPDQQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=739323 OFU58_RS01690 WP_002116864.1 357636..358163(+) (pilP) [Acinetobacter pittii strain BM4623]
ATGAAACTTAAACAATTTTCTCTTTCTATTTTGGCATGTTTAGCTTTAGCTGGATGCGACTCTAGAATCGACGCCGTAAA
TCAGCAAATGGCCGATATACGTAATCAGCCACCACAAGCCATAGAACCAGCGCCTGTTTTTACGCCTGTGCCACAATTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTACCAAGCTCACTTGCTGCTGAGCTCAAAATTATGGCGGGGAAACGA
GTATATCCGAATTTCTCACGTGCACCACAGCCACTCGAAAGCTATGCATTAGAGTCCTTAAATATGAAAGGAAGTATGCG
TAACAGCCGCGGGCAAGTCATGGCTCTGATCCAAACACCTGATCAACAAATTGAGCGAGTGCAGGTAGGGAACTATATCG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCTACTCAGATTGATCTGGTGGAGATTGTTCCTGATGGACGAGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

88.571

100

0.886
  comL Acinetobacter baylyi ADP1

75.152

94.286

0.709