Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   OFU58_RS01680 Genome accession   NZ_CP107289
Coordinates   356235..356876 (+) Length   213 a.a.
NCBI ID   WP_032004890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain BM4623     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 351235..361876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFU58_RS01660 (OFU58_01660) - 351238..351570 (+) 333 WP_002116981.1 hypothetical protein -
  OFU58_RS01665 (OFU58_01665) rrmA 351573..352397 (+) 825 WP_280586961.1 putative RNA methyltransferase -
  OFU58_RS01670 (OFU58_01670) ponA 352454..355015 (-) 2562 WP_005804528.1 penicillin-binding protein PBP1a -
  OFU58_RS01675 (OFU58_01675) pilM 355177..356235 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  OFU58_RS01680 (OFU58_01680) pilN 356235..356876 (+) 642 WP_032004890.1 PilN domain-containing protein Machinery gene
  OFU58_RS01685 (OFU58_01685) pilO 356873..357625 (+) 753 WP_280586966.1 type 4a pilus biogenesis protein PilO Machinery gene
  OFU58_RS01690 (OFU58_01690) pilP 357636..358163 (+) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  OFU58_RS01695 (OFU58_01695) pilQ 358226..360376 (+) 2151 WP_130119886.1 type IV pilus secretin PilQ family protein Machinery gene
  OFU58_RS01700 (OFU58_01700) aroK 360388..360957 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23907.33 Da        Isoelectric Point: 5.4186

>NTDB_id=739321 OFU58_RS01680 WP_032004890.1 356235..356876(+) (pilN) [Acinetobacter pittii strain BM4623]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAVSSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=739321 OFU58_RS01680 WP_032004890.1 356235..356876(+) (pilN) [Acinetobacter pittii strain BM4623]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATTATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGTGACGCA
ATTATTGAGCGCATGAAGCTCATTCAAGGTTTGCAAAGCCAACGTCCGGTCGTTGTGCGTTTGGTGGATGAATTAGTACG
TGTGACTCCAGCAGCCATGTATTTGACTAAATTCAGCCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTGTAAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGTGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.202

100

0.892
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685