Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OFO16_RS04805 Genome accession   NZ_CP107282
Coordinates   1021359..1021643 (+) Length   94 a.a.
NCBI ID   WP_263838693.1    Uniprot ID   -
Organism   Vibrio natriegens strain PWH3a     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1016359..1026643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFO16_RS04795 (OFO16_04795) - 1018835..1019107 (+) 273 WP_014231223.1 HU family DNA-binding protein -
  OFO16_RS04800 (OFO16_04800) ppiD 1019311..1021170 (+) 1860 WP_263838281.1 peptidylprolyl isomerase -
  OFO16_RS04805 (OFO16_04805) comEA 1021359..1021643 (+) 285 WP_263838693.1 ComEA family DNA-binding protein Machinery gene
  OFO16_RS04810 (OFO16_04810) rrtA 1021726..1022277 (-) 552 WP_263838282.1 rhombosortase -
  OFO16_RS04815 (OFO16_04815) - 1022281..1022904 (+) 624 WP_263838283.1 tRNA-uridine aminocarboxypropyltransferase -
  OFO16_RS04820 (OFO16_04820) - 1022901..1024223 (-) 1323 WP_263838284.1 anti-phage deoxyguanosine triphosphatase -
  OFO16_RS04825 (OFO16_04825) yfbR 1024247..1024831 (-) 585 WP_263838285.1 5'-deoxynucleotidase -
  OFO16_RS04830 (OFO16_04830) - 1024923..1026137 (-) 1215 WP_014231230.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10208.82 Da        Isoelectric Point: 5.8124

>NTDB_id=739258 OFO16_RS04805 WP_263838693.1 1021359..1021643(+) (comEA) [Vibrio natriegens strain PWH3a]
MKWVLTLLLCVFAPFGLAADTTADKYEGIEITVNINSATAEEIATMLKGIGEKKAQDIVDYRTQHGPFKTVNDLGNVKGI
GDATLKKNEGRIIL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=739258 OFO16_RS04805 WP_263838693.1 1021359..1021643(+) (comEA) [Vibrio natriegens strain PWH3a]
ATGAAATGGGTTTTAACTTTATTGTTATGCGTATTTGCACCGTTTGGGTTAGCAGCCGATACAACAGCGGATAAATATGA
AGGGATTGAAATTACCGTAAACATAAATTCAGCAACGGCAGAAGAGATTGCCACAATGCTGAAAGGGATTGGTGAAAAGA
AAGCGCAAGATATTGTGGATTACCGCACCCAGCATGGCCCATTCAAAACAGTCAATGACCTAGGGAATGTTAAGGGAATC
GGAGATGCTACTTTGAAGAAAAACGAAGGTCGCATCATCCTCTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(32-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

81.915

100

0.819
  comEA Vibrio campbellii strain DS40M4

70.526

100

0.713
  comEA Vibrio cholerae strain A1552

57.447

100

0.574
  comEA Vibrio cholerae C6706

57.447

100

0.574
  comE1/comEA Haemophilus influenzae Rd KW20

56.452

65.957

0.372
  comEA/comE1 Glaesserella parasuis strain SC1401

56.452

65.957

0.372
  comEA Acinetobacter baylyi ADP1

52.239

71.277

0.372