NTDB

Overview

Name	ciaR	Type	Regulator
Locus tag	QBE57_RS03425	Genome accession	NZ_CP121670
Coordinates	686651..687322 (+)	Length	223 a.a.
NCBI ID	WP_009909965.1	Uniprot ID	-
Organism	Streptococcus suis strain HBXY-SL
Function	repress competence development (predicted from homology) Competence regulation

Genomic Context

Location: 681651..692322

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QBE57_RS03400	pstB	682030..682833 (+)	804	WP_002940866.1	phosphate ABC transporter ATP-binding protein PstB	-
QBE57_RS03405	pstB	682845..683603 (+)	759	WP_002937614.1	phosphate ABC transporter ATP-binding protein PstB	-
QBE57_RS03410	phoU	683632..684288 (+)	657	WP_012028219.1	phosphate signaling complex protein PhoU	-
QBE57_RS03415	-	684490..685692 (-)	1203	WP_012775158.1	IS110 family transposase	-
QBE57_RS03420	-	686077..686457 (+)	381	WP_012027076.1	hypothetical protein	-
QBE57_RS03425	ciaR	686651..687322 (+)	672	WP_009909965.1	response regulator transcription factor	Regulator
QBE57_RS03430	ciaH	687315..688694 (+)	1380	WP_012027074.1	sensor histidine kinase	Regulator
QBE57_RS03435	-	689025..690254 (+)	1230	WP_171935729.1	transglutaminase domain-containing protein	-
QBE57_RS03440	tnpA	690666..691130 (+)	465	WP_012775157.1	IS200/IS605-like element ISSsu4 family transposase	-
QBE57_RS03445	rpsT	691272..691520 (-)	249	WP_012027069.1	30S ribosomal protein S20	-

Sequence

Protein

Download Length: 223 a.a. Molecular weight: 25290.00 Da Isoelectric Point: 4.2183

                                >NTDB_id=738556 QBE57_RS03425 WP_009909965.1 686651..687322(+) (ciaR) [Streptococcus suis strain HBXY-SL]

MIKILLVEDDLSLSNSVFDFLDDFADVMQVFDGEEGVYEAETGVYDLILLDLMLPEKDGFQVLKELREKGVTTPVLITTA

KESLEDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLTFGDVTVDLSTNMTMVNGEEVELLGKEFDLLVY

FLQNQNVILPKTQIFDRIWGFDSDTTISVVEVYVSKIRKKLKGTTFGENLQTLRSVGYILKNA

Nucleotide

Download Length: 672 bp

                                >NTDB_id=738556 QBE57_RS03425 WP_009909965.1 686651..687322(+) (ciaR) [Streptococcus suis strain HBXY-SL]

ATGATTAAAATATTGTTAGTGGAAGATGATTTAAGTCTATCAAATTCTGTTTTCGATTTCTTAGATGATTTTGCGGATGT

TATGCAGGTCTTTGATGGTGAAGAGGGCGTTTATGAGGCGGAAACAGGCGTTTATGATTTGATTCTTTTGGATTTAATGT

TACCTGAAAAAGACGGCTTTCAAGTCTTGAAAGAGTTACGTGAAAAGGGGGTTACGACACCAGTTCTGATTACAACAGCC

AAGGAAAGTCTAGAGGATAAAGGCCATGGTTTTGAATTGGGGGCTGATGACTATTTGACAAAACCGTTTTATTTAGAAGA

ATTGAAGATGCGAATTCAAGCTCTATTAAAACGAGCGGGTAAGTTTAATGAAAACACACTAACCTTTGGAGATGTGACAG

TTGACCTATCTACAAATATGACGATGGTAAATGGCGAAGAAGTTGAACTGTTAGGAAAAGAATTTGATCTACTAGTTTAT

TTCTTGCAAAATCAAAATGTTATTTTGCCAAAAACACAAATTTTTGACCGTATTTGGGGCTTTGACAGTGATACTACAAT

TTCAGTAGTAGAGGTATATGTTTCTAAAATTAGGAAAAAGTTGAAAGGAACGACTTTTGGGGAAAATCTTCAAACCCTGC

GTAGTGTCGGGTACATTCTAAAAAATGCCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-220)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ciaR	Streptococcus mutans UA159	90.135	100	0.901
ciaR	Streptococcus pneumoniae Rx1	88.341	100	0.883
ciaR	Streptococcus pneumoniae D39	88.341	100	0.883
ciaR	Streptococcus pneumoniae R6	88.341	100	0.883
ciaR	Streptococcus pneumoniae TIGR4	88.341	100	0.883
covR	Lactococcus lactis subsp. lactis strain DGCC12653	38.496	100	0.39
vicR	Streptococcus mutans UA159	35.47	100	0.372
covR	Streptococcus salivarius strain HSISS4	35.841	100	0.363

Detailed information NTG0738556