Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ACRAD_RS13135 Genome accession   NZ_AP019740
Coordinates   2775569..2776279 (-) Length   236 a.a.
NCBI ID   WP_005024207.1    Uniprot ID   -
Organism   Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2770569..2781279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACRAD_RS13115 (ACRAD_25630) aroB 2771155..2772240 (-) 1086 WP_005024217.1 3-dehydroquinate synthase -
  ACRAD_RS13120 (ACRAD_25640) aroK 2772259..2772810 (-) 552 WP_005024215.1 shikimate kinase AroK -
  ACRAD_RS13125 (ACRAD_25650) pilQ 2772847..2775027 (-) 2181 WP_005024212.1 type IV pilus secretin PilQ Machinery gene
  ACRAD_RS13130 (ACRAD_25660) pilP 2775045..2775572 (-) 528 WP_005024210.1 pilus assembly protein PilP Machinery gene
  ACRAD_RS13135 (ACRAD_25670) comO 2775569..2776279 (-) 711 WP_005024207.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACRAD_RS13140 (ACRAD_25680) pilN 2776276..2776935 (-) 660 WP_005018044.1 PilN domain-containing protein Machinery gene
  ACRAD_RS13145 (ACRAD_25690) comM 2776935..2777993 (-) 1059 WP_005024205.1 pilus assembly protein PilM Machinery gene
  ACRAD_RS13150 (ACRAD_25700) ponA 2778155..2780701 (+) 2547 WP_005024203.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26916.21 Da        Isoelectric Point: 4.4700

>NTDB_id=73761 ACRAD_RS13135 WP_005024207.1 2775569..2776279(-) (comO) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
MSREEFDDLNQEDAKPAKRKMTLEAFLQQFNTLDTHNYGSWPFSVKLTCWIFLFLLVCAIGYFLAIRPKLEAISNAQAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNEQLEQLPKETEIPGLVEDINVAGVSSGLKFKNIRLESEIRQEFFIEQP
IDIQATGDYHAFGSFVSTIAALPRIVTLHDFEIASTQAQNSDIPEVNYAVKAKTYRYVGNNEQPNTTDTPAGGQPQ

Nucleotide


Download         Length: 711 bp        

>NTDB_id=73761 ACRAD_RS13135 WP_005024207.1 2775569..2776279(-) (comO) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
ATGAGTCGTGAAGAATTCGATGATTTAAACCAGGAAGATGCTAAACCTGCTAAAAGAAAAATGACGCTAGAAGCCTTCCT
GCAACAGTTTAATACGCTGGATACACATAATTACGGCAGCTGGCCTTTTTCAGTCAAACTGACCTGCTGGATATTTCTGT
TTCTGCTGGTTTGTGCAATTGGCTATTTTTTAGCAATTCGCCCCAAACTTGAAGCTATTTCTAATGCGCAGGCACAAGAA
CAGAATCTGTTAAACGAGTTTCGTGAAAAGGACTCTAAACTGCGTAACTTACAGCAATACCAAGCACAACTACAGGAAAT
GGAAGCGAATTTTAATGAGCAACTGGAACAGTTGCCTAAAGAAACCGAGATTCCTGGACTGGTTGAAGATATTAACGTTG
CAGGAGTAAGTTCTGGCCTGAAATTTAAAAATATTCGTCTAGAAAGTGAAATTCGGCAGGAGTTCTTTATTGAACAGCCA
ATTGATATTCAGGCAACAGGTGATTATCATGCCTTTGGTTCTTTTGTGAGCACTATTGCGGCGCTTCCACGAATTGTAAC
CCTGCATGACTTTGAAATTGCCAGTACACAGGCGCAGAACTCAGATATTCCAGAAGTAAATTATGCGGTGAAAGCTAAAA
CATACCGATATGTCGGTAATAATGAGCAGCCAAATACTACGGATACCCCAGCAGGAGGGCAGCCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

67.755

100

0.703
  pilO Acinetobacter baumannii D1279779

68.644

100

0.686

Multiple sequence alignment