Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OCT51_RS09675 Genome accession   NZ_CP107009
Coordinates   2062745..2063011 (-) Length   88 a.a.
NCBI ID   WP_263583662.1    Uniprot ID   -
Organism   Halomonas sp. LR3S48     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2057745..2068011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCT51_RS09650 (OCT51_09650) - 2058055..2058789 (-) 735 WP_263583658.1 RNA methyltransferase -
  OCT51_RS09655 (OCT51_09655) groL 2058901..2060544 (-) 1644 WP_263583659.1 chaperonin GroEL -
  OCT51_RS09660 (OCT51_09660) - 2060604..2060897 (-) 294 WP_104204123.1 co-chaperone GroES -
  OCT51_RS09665 (OCT51_09665) - 2061120..2061638 (-) 519 WP_263583660.1 FxsA family protein -
  OCT51_RS09670 (OCT51_09670) - 2061889..2062650 (+) 762 WP_263583661.1 SDR family oxidoreductase -
  OCT51_RS09675 (OCT51_09675) comEA 2062745..2063011 (-) 267 WP_263583662.1 ComEA family DNA-binding protein Machinery gene
  OCT51_RS09680 (OCT51_09680) - 2063265..2063609 (-) 345 WP_263583663.1 4a-hydroxytetrahydrobiopterin dehydratase -
  OCT51_RS09685 (OCT51_09685) phhA 2063680..2064510 (-) 831 WP_263583664.1 phenylalanine 4-monooxygenase -
  OCT51_RS09690 (OCT51_09690) - 2064815..2066377 (+) 1563 WP_263583665.1 sigma-54-dependent transcriptional regulator -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9109.21 Da        Isoelectric Point: 3.8861

>NTDB_id=737334 OCT51_RS09675 WP_263583662.1 2062745..2063011(-) (comEA) [Halomonas sp. LR3S48]
MKGVVQAAFLALTLSFASLAMAQDVAPINVNTADAELLAELPGIGPSRAQAIIEDREANGNFESADDLTRVSGIGSATVD
GFRDQVAF

Nucleotide


Download         Length: 267 bp        

>NTDB_id=737334 OCT51_RS09675 WP_263583662.1 2062745..2063011(-) (comEA) [Halomonas sp. LR3S48]
ATGAAGGGAGTCGTTCAAGCTGCCTTTCTGGCGCTGACACTGAGCTTTGCCTCGCTGGCCATGGCTCAGGATGTGGCACC
GATCAACGTCAATACCGCTGATGCGGAATTGCTCGCCGAGCTGCCAGGCATCGGGCCGAGCCGTGCCCAAGCAATCATCG
AGGATCGCGAAGCCAACGGAAACTTCGAAAGTGCCGACGACCTGACCCGGGTCAGCGGTATCGGATCAGCCACCGTGGAC
GGATTCCGCGACCAGGTCGCTTTCTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(27-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

46.739

100

0.489
  comEA Vibrio cholerae strain A1552

46.739

100

0.489
  comEA Vibrio campbellii strain DS40M4

38.71

100

0.409
  comE Neisseria gonorrhoeae MS11

40.698

97.727

0.398
  comE Neisseria gonorrhoeae MS11

40.698

97.727

0.398
  comE Neisseria gonorrhoeae MS11

40.698

97.727

0.398
  comE Neisseria gonorrhoeae MS11

40.698

97.727

0.398
  comEA Vibrio parahaemolyticus RIMD 2210633

40.741

92.045

0.375
  comA Synechocystis sp. PCC 6803

43.243

84.091

0.364