Detailed information
Bioinformatically predicted
Overview
| Name | clpP | Type | Regulator |
| Locus tag | OAT02_RS03615 | Genome accession | NZ_CP106947 |
| Coordinates | 704892..705473 (-) | Length | 193 a.a. |
| NCBI ID | WP_001049162.1 | Uniprot ID | A0A9W5QPC2 |
| Organism | Bacillus thuringiensis strain 4F5 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 704892..748855 | 704892..705473 | within | 0 |
Gene organization within MGE regions
Location: 704892..748855
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OAT02_RS03615 (OAT02_03615) | clpP | 704892..705473 (-) | 582 | WP_001049162.1 | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | Regulator |
| OAT02_RS03620 (OAT02_03620) | - | 705714..706583 (-) | 870 | WP_000018924.1 | DUF421 domain-containing protein | - |
| OAT02_RS03625 (OAT02_03625) | - | 706604..706810 (-) | 207 | WP_000215909.1 | DUF1657 domain-containing protein | - |
| OAT02_RS03630 (OAT02_03630) | spoVAE | 706822..707172 (-) | 351 | WP_000575919.1 | stage V sporulation protein AE | - |
| OAT02_RS03635 (OAT02_03635) | spoVAD | 707169..708185 (-) | 1017 | WP_000938972.1 | stage V sporulation protein AD | - |
| OAT02_RS03640 (OAT02_03640) | spoVAC | 708186..708662 (-) | 477 | WP_000095408.1 | stage V sporulation protein AC | - |
| OAT02_RS03645 (OAT02_03645) | - | 708692..709180 (-) | 489 | WP_001226064.1 | YhcN/YlaJ family sporulation lipoprotein | - |
| OAT02_RS03650 (OAT02_03650) | - | 709274..709480 (-) | 207 | WP_000216166.1 | DUF1657 domain-containing protein | - |
| OAT02_RS03660 (OAT02_03660) | - | 709895..711031 (-) | 1137 | WP_038413879.1 | tyrosine-type recombinase/integrase | - |
| OAT02_RS03665 (OAT02_03665) | - | 711062..711529 (-) | 468 | WP_038413877.1 | hypothetical protein | - |
| OAT02_RS03670 (OAT02_03670) | - | 711540..711932 (-) | 393 | WP_053514261.1 | helix-turn-helix transcriptional regulator | - |
| OAT02_RS03675 (OAT02_03675) | - | 712097..712327 (+) | 231 | WP_000216290.1 | helix-turn-helix transcriptional regulator | - |
| OAT02_RS03680 (OAT02_03680) | - | 712362..712595 (+) | 234 | WP_023523446.1 | DUF771 domain-containing protein | - |
| OAT02_RS03685 (OAT02_03685) | - | 712654..712806 (+) | 153 | WP_170924136.1 | hypothetical protein | - |
| OAT02_RS03690 (OAT02_03690) | - | 712822..713556 (+) | 735 | WP_053514262.1 | AP2/ERF family transcription factor | - |
| OAT02_RS03695 (OAT02_03695) | - | 713557..713907 (+) | 351 | WP_053514263.1 | hypothetical protein | - |
| OAT02_RS03700 (OAT02_03700) | - | 713932..714579 (+) | 648 | WP_000186947.1 | sigma-70 family RNA polymerase sigma factor | - |
| OAT02_RS03705 (OAT02_03705) | - | 714640..714906 (+) | 267 | WP_000636796.1 | hypothetical protein | - |
| OAT02_RS03710 (OAT02_03710) | - | 714893..715048 (+) | 156 | WP_170924137.1 | hypothetical protein | - |
| OAT02_RS03715 (OAT02_03715) | - | 715068..715355 (+) | 288 | WP_000023094.1 | hypothetical protein | - |
| OAT02_RS03720 (OAT02_03720) | - | 715333..715881 (+) | 549 | WP_053513624.1 | host-nuclease inhibitor Gam family protein | - |
| OAT02_RS03725 (OAT02_03725) | - | 715887..716483 (+) | 597 | WP_053513630.1 | hypothetical protein | - |
| OAT02_RS03730 (OAT02_03730) | - | 716506..717438 (+) | 933 | WP_053514273.1 | AAA family ATPase | - |
| OAT02_RS03735 (OAT02_03735) | - | 717438..717872 (+) | 435 | WP_053514272.1 | DUF669 domain-containing protein | - |
| OAT02_RS03740 (OAT02_03740) | - | 717942..720329 (+) | 2388 | WP_053514271.1 | phage/plasmid primase, P4 family | - |
| OAT02_RS03745 (OAT02_03745) | - | 720627..721061 (+) | 435 | WP_053513015.1 | hypothetical protein | - |
| OAT02_RS03750 (OAT02_03750) | - | 721062..721601 (+) | 540 | WP_053513012.1 | ERCC4 domain-containing protein | - |
| OAT02_RS03755 (OAT02_03755) | - | 721635..722072 (+) | 438 | WP_074643124.1 | hypothetical protein | - |
| OAT02_RS03760 (OAT02_03760) | - | 722142..722396 (+) | 255 | WP_033698086.1 | hypothetical protein | - |
| OAT02_RS03765 (OAT02_03765) | - | 722432..722731 (+) | 300 | WP_053514278.1 | hypothetical protein | - |
| OAT02_RS03770 (OAT02_03770) | - | 722905..723078 (+) | 174 | WP_198319674.1 | DUF6877 family protein | - |
| OAT02_RS03775 (OAT02_03775) | - | 723120..723506 (+) | 387 | WP_074643128.1 | hypothetical protein | - |
| OAT02_RS03780 (OAT02_03780) | - | 723649..724128 (+) | 480 | WP_080495956.1 | hypothetical protein | - |
| OAT02_RS03785 (OAT02_03785) | - | 724212..724544 (+) | 333 | WP_074643130.1 | hypothetical protein | - |
| OAT02_RS03790 (OAT02_03790) | - | 724541..724906 (+) | 366 | WP_074643136.1 | HNH endonuclease signature motif containing protein | - |
| OAT02_RS03795 (OAT02_03795) | - | 725026..725460 (+) | 435 | WP_053513002.1 | P27 family phage terminase small subunit | - |
| OAT02_RS03800 (OAT02_03800) | - | 725457..727181 (+) | 1725 | WP_053513000.1 | terminase TerL endonuclease subunit | - |
| OAT02_RS03805 (OAT02_03805) | - | 727196..727408 (+) | 213 | WP_053512998.1 | hypothetical protein | - |
| OAT02_RS03810 (OAT02_03810) | - | 727408..727623 (+) | 216 | WP_053512995.1 | hypothetical protein | - |
| OAT02_RS03815 (OAT02_03815) | - | 727662..728846 (+) | 1185 | WP_053512993.1 | phage portal protein | - |
| OAT02_RS03820 (OAT02_03820) | - | 728836..729417 (+) | 582 | WP_053512992.1 | HK97 family phage prohead protease | - |
| OAT02_RS03825 (OAT02_03825) | - | 729419..730735 (+) | 1317 | WP_053512990.1 | phage major capsid protein | - |
| OAT02_RS03830 (OAT02_03830) | - | 730737..730997 (+) | 261 | WP_053512988.1 | head-tail connector protein | - |
| OAT02_RS03835 (OAT02_03835) | - | 730972..731307 (+) | 336 | WP_053512986.1 | hypothetical protein | - |
| OAT02_RS03840 (OAT02_03840) | - | 731297..731626 (+) | 330 | WP_001166633.1 | hypothetical protein | - |
| OAT02_RS03845 (OAT02_03845) | - | 731626..732003 (+) | 378 | WP_053512984.1 | HK97 gp10 family phage protein | - |
| OAT02_RS03850 (OAT02_03850) | - | 732015..732650 (+) | 636 | WP_053512982.1 | major tail protein | - |
| OAT02_RS03855 (OAT02_03855) | - | 732662..733048 (+) | 387 | WP_053512980.1 | hypothetical protein | - |
| OAT02_RS03860 (OAT02_03860) | - | 733087..733275 (+) | 189 | WP_006927278.1 | hypothetical protein | - |
| OAT02_RS03865 (OAT02_03865) | - | 733292..736813 (+) | 3522 | WP_053512978.1 | phage tail tape measure protein | - |
| OAT02_RS03870 (OAT02_03870) | - | 736815..737498 (+) | 684 | WP_053512976.1 | phage tail domain-containing protein | - |
| OAT02_RS03875 (OAT02_03875) | - | 737495..739837 (+) | 2343 | WP_053512974.1 | phage tail spike protein | - |
| OAT02_RS03880 (OAT02_03880) | - | 739852..741039 (+) | 1188 | WP_053514037.1 | BppU family phage baseplate upper protein | - |
| OAT02_RS03885 (OAT02_03885) | - | 741184..742377 (-) | 1194 | WP_000499524.1 | IS110 family transposase | - |
| OAT02_RS03890 (OAT02_03890) | - | 742673..742903 (+) | 231 | WP_006926645.1 | BhlA/UviB family holin-like peptide | - |
| OAT02_RS03895 (OAT02_03895) | - | 742900..743952 (+) | 1053 | WP_053512218.1 | N-acetylmuramoyl-L-alanine amidase | - |
| OAT02_RS03900 (OAT02_03900) | - | 744131..744460 (-) | 330 | WP_000119474.1 | hypothetical protein | - |
| OAT02_RS03905 (OAT02_03905) | - | 744525..745196 (-) | 672 | WP_000930621.1 | hypothetical protein | - |
| OAT02_RS03910 (OAT02_03910) | - | 745346..745564 (+) | 219 | WP_053512217.1 | hypothetical protein | - |
| OAT02_RS03915 (OAT02_03915) | - | 745588..745881 (+) | 294 | WP_053512216.1 | YolD-like family protein | - |
| OAT02_RS03920 (OAT02_03920) | - | 745898..746725 (-) | 828 | WP_053514351.1 | helix-turn-helix domain-containing protein | - |
| OAT02_RS03925 (OAT02_03925) | rpoN | 747293..748600 (+) | 1308 | WP_053514352.1 | RNA polymerase factor sigma-54 | - |
| OAT02_RS03930 (OAT02_03930) | - | 748610..748855 (+) | 246 | WP_000869730.1 | glutaredoxin family protein | - |
Sequence
Protein
Download Length: 193 a.a. Molecular weight: 21419.67 Da Isoelectric Point: 5.0423
>NTDB_id=736745 OAT02_RS03615 WP_001049162.1 704892..705473(-) (clpP) [Bacillus thuringiensis strain 4F5]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAEKALEYGLIDKIFTNR
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAEKALEYGLIDKIFTNR
Nucleotide
Download Length: 582 bp
>NTDB_id=736745 OAT02_RS03615 WP_001049162.1 704892..705473(-) (clpP) [Bacillus thuringiensis strain 4F5]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAAGA
CCGCATCATTATGCTTGGTAGTGCAATTGATGACAACGTAGCTAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCAGAAAAAGATATTCACATCTACATCAACAGCCCTGGTGGTTCTATCACAGCAGGTATGGCAATCTATGATACA
ATGCAGTTTATTAAACCACAAGTATCAACAATCTGTATCGGTATGGCAGCATCTATGGGTGCATTCTTACTTGCAGCAGG
TGAAAAAGGAAAACGTTATGCACTTCCAAACAGTGAAGTAATGATTCACCAACCACTTGGCGGAGCACAAGGTCAAGCGA
CTGAAATCGAAATCGCTGCAAAACGTATCCTATTCTTACGTGAAAAACTAAACCAAATTCTTGCTGACCGCACTGGTCAA
CCACTTGAAGTACTACAACGCGACACAGACCGCGACAACTTCATGACAGCAGAAAAAGCTTTAGAATACGGTTTAATCGA
TAAAATCTTTACAAATCGTTAA
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAAGA
CCGCATCATTATGCTTGGTAGTGCAATTGATGACAACGTAGCTAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCAGAAAAAGATATTCACATCTACATCAACAGCCCTGGTGGTTCTATCACAGCAGGTATGGCAATCTATGATACA
ATGCAGTTTATTAAACCACAAGTATCAACAATCTGTATCGGTATGGCAGCATCTATGGGTGCATTCTTACTTGCAGCAGG
TGAAAAAGGAAAACGTTATGCACTTCCAAACAGTGAAGTAATGATTCACCAACCACTTGGCGGAGCACAAGGTCAAGCGA
CTGAAATCGAAATCGCTGCAAAACGTATCCTATTCTTACGTGAAAAACTAAACCAAATTCTTGCTGACCGCACTGGTCAA
CCACTTGAAGTACTACAACGCGACACAGACCGCGACAACTTCATGACAGCAGAAAAAGCTTTAGAATACGGTTTAATCGA
TAAAATCTTTACAAATCGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpP | Bacillus subtilis subsp. subtilis str. 168 |
90.104 |
99.482 |
0.896 |
| clpP | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
67.021 |
97.409 |
0.653 |
| clpP | Streptococcus thermophilus LMG 18311 |
60.417 |
99.482 |
0.601 |
| clpP | Streptococcus thermophilus LMD-9 |
60.417 |
99.482 |
0.601 |
| clpP | Lactococcus lactis subsp. cremoris KW2 |
58.854 |
99.482 |
0.585 |
| clpP | Streptococcus pneumoniae D39 |
57.292 |
99.482 |
0.57 |
| clpP | Streptococcus pneumoniae Rx1 |
57.292 |
99.482 |
0.57 |
| clpP | Streptococcus pneumoniae R6 |
57.292 |
99.482 |
0.57 |
| clpP | Streptococcus pneumoniae TIGR4 |
57.292 |
99.482 |
0.57 |
| clpP | Lactococcus lactis subsp. lactis strain DGCC12653 |
56.771 |
99.482 |
0.565 |
| clpP | Streptococcus pyogenes JRS4 |
55.729 |
99.482 |
0.554 |
| clpP | Streptococcus pyogenes MGAS315 |
55.729 |
99.482 |
0.554 |
| clpP | Streptococcus mutans UA159 |
55.44 |
100 |
0.554 |