Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ND436_RS11565 Genome accession   NZ_CP106918
Coordinates   2149261..2149767 (-) Length   168 a.a.
NCBI ID   WP_265524986.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9071     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2144261..2154767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ND436_RS11545 (ND436_011545) pilA 2145950..2147203 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  ND436_RS11550 (ND436_011550) - 2147473..2147769 (-) 297 WP_260240075.1 hypothetical protein -
  ND436_RS11555 (ND436_011555) - 2147899..2148030 (+) 132 WP_012503844.1 hypothetical protein -
  ND436_RS11560 (ND436_011560) - 2148004..2148715 (-) 712 Protein_2219 opacity family porin -
  ND436_RS11565 (ND436_011565) pilE 2149261..2149767 (-) 507 WP_265524986.1 pilin Machinery gene
  ND436_RS11570 (ND436_011570) - 2150135..2150278 (-) 144 WP_012503975.1 hypothetical protein -
  ND436_RS11580 (ND436_011580) - 2150581..2150925 (-) 345 Protein_2222 pilin -
  ND436_RS11585 (ND436_011585) - 2150925..2151335 (-) 411 Protein_2223 pilin -
  ND436_RS11590 (ND436_011590) pilE 2151882..2152286 (-) 405 WP_260253371.1 pilin Machinery gene
  ND436_RS11595 (ND436_011595) lpxC 2152406..2153329 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  ND436_RS12690 - 2153821..2154543 (-) 723 WP_409261983.1 pilin -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 17923.71 Da        Isoelectric Point: 10.3094

>NTDB_id=736616 ND436_RS11565 WP_265524986.1 2149261..2149767(-) (pilE) [Neisseria gonorrhoeae strain 9071]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNNGIWPKDNGDAGVASSSSII
GKYVESVTVTNGVVTAKMKSDGVNKEIQGKKLSLWAKRQDGSVKWFCGQPVTRAPTKPAKPTTPSPKTTPATTKSKPSTC
RQPAAIRQ

Nucleotide


Download         Length: 507 bp        

>NTDB_id=736616 ND436_RS11565 WP_265524986.1 2149261..2149767(-) (pilE) [Neisseria gonorrhoeae strain 9071]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATAACGGCATATGGCCGAAAGACAACGGCGATGCCGGCGTGGCATCTTCTTCATCAATCATA
GGCAAATATGTTGAAAGCGTTACGGTCACAAACGGCGTCGTTACCGCCAAAATGAAATCAGACGGCGTAAACAAAGAAAT
CCAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCG
CGCCGACAAAGCCGGCAAAGCCGACGACGCCGTCACCAAAGACGACACCGGCAACGACAAAATCGAAACCAAGCACCTGC
CGTCAACCTGCCGCGATACGTCAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Pilin (bacterial filament) (Pilin)

(36-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

76.364

98.214

0.75
  pilE Neisseria gonorrhoeae MS11

71.687

98.81

0.708