Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ND436_RS11590 Genome accession   NZ_CP106918
Coordinates   2151882..2152286 (-) Length   134 a.a.
NCBI ID   WP_260253371.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9071     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2146882..2157286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ND436_RS11550 (ND436_011550) - 2147473..2147769 (-) 297 WP_260240075.1 hypothetical protein -
  ND436_RS11555 (ND436_011555) - 2147899..2148030 (+) 132 WP_012503844.1 hypothetical protein -
  ND436_RS11560 (ND436_011560) - 2148004..2148715 (-) 712 Protein_2219 opacity family porin -
  ND436_RS11565 (ND436_011565) pilE 2149261..2149767 (-) 507 WP_265524986.1 pilin Machinery gene
  ND436_RS11570 (ND436_011570) - 2150135..2150278 (-) 144 WP_012503975.1 hypothetical protein -
  ND436_RS11580 (ND436_011580) - 2150581..2150925 (-) 345 Protein_2222 pilin -
  ND436_RS11585 (ND436_011585) - 2150925..2151335 (-) 411 Protein_2223 pilin -
  ND436_RS11590 (ND436_011590) pilE 2151882..2152286 (-) 405 WP_260253371.1 pilin Machinery gene
  ND436_RS11595 (ND436_011595) lpxC 2152406..2153329 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  ND436_RS12690 - 2153821..2154543 (-) 723 WP_409261983.1 pilin -
  ND436_RS11615 (ND436_011615) - 2154569..2154784 (-) 216 Protein_2227 pilin -
  ND436_RS11620 (ND436_011620) - 2155157..2155288 (-) 132 WP_010356054.1 hypothetical protein -
  ND436_RS11625 (ND436_011625) - 2155370..2156058 (-) 689 Protein_2229 SprT family zinc-dependent metalloprotease -
  ND436_RS11630 (ND436_011630) - 2156055..2156798 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14648.50 Da        Isoelectric Point: 8.4666

>NTDB_id=736617 ND436_RS11590 WP_260253371.1 2151882..2152286(-) (pilE) [Neisseria gonorrhoeae strain 9071]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNNGEWPKDNASAGVASASDIKGKYVEKVEVKNGVVTAQMKPSGVNKEIQ
GKRLSLWARRQDGSVKWFCGQPVTRADDAVKAGTDAIDTKHLPSTCRDLPRYVI

Nucleotide


Download         Length: 405 bp        

>NTDB_id=736617 ND436_RS11590 WP_260253371.1 2151882..2152286(-) (pilE) [Neisseria gonorrhoeae strain 9071]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATAACGGCGAATGGCCGAAAGACAACGCTTCTGCCGGCGTGGCATCCGCCTCCGACATCAAAGGCA
AATATGTTGAGAAAGTTGAAGTCAAAAACGGCGTCGTTACCGCCCAAATGAAACCAAGCGGCGTAAACAAAGAAATCCAA
GGCAAAAGACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGCCGA
CGACGCCGTCAAAGCCGGCACCGACGCCATCGACACCAAGCACCTGCCGTCAACCTGCCGCGACCTGCCGCGATACGTCA
TCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

74.242

98.507

0.731
  pilE Neisseria gonorrhoeae MS11

69.925

99.254

0.694