Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ND436_RS12680 Genome accession   NZ_CP106918
Coordinates   2002359..2002487 (-) Length   42 a.a.
NCBI ID   WP_322740848.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9071     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1997359..2007487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ND436_RS10735 (ND436_010735) - 1998208..1998492 (-) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  ND436_RS10740 (ND436_010740) pilC 1999399..2002359 (-) 2961 WP_322740847.1 PilC family type IV pilus tip adhesin Machinery gene
  ND436_RS12680 pilC 2002359..2002487 (-) 129 WP_322740848.1 hypothetical protein Machinery gene
  ND436_RS10745 (ND436_010745) - 2003174..2003437 (+) 264 WP_229433460.1 hypothetical protein -
  ND436_RS10750 (ND436_010750) gnd 2003517..2004965 (+) 1449 WP_003688061.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  ND436_RS10755 (ND436_010755) waaA 2005028..2006299 (+) 1272 WP_010360974.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  ND436_RS10760 (ND436_010760) - 2006340..2006789 (+) 450 WP_003688065.1 CopD family copper resistance protein -

Sequence

Protein


Download         Length: 42 a.a.        Molecular weight: 4901.85 Da        Isoelectric Point: 12.9831

>NTDB_id=736621 ND436_RS12680 WP_322740848.1 2002359..2002487(-) (pilC) [Neisseria gonorrhoeae strain 9071]
MNKTLKRQVFRHTALYAAILMFSHTGGRGGGRRRRKRMNTLL

Nucleotide


Download         Length: 129 bp        

>NTDB_id=736621 ND436_RS12680 WP_322740848.1 2002359..2002487(-) (pilC) [Neisseria gonorrhoeae strain 9071]
ATGAATAAAACTTTGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GCGGGGGGGGGGCAGGCGCAGGCGCAAACGTATGAATACGCTATTGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

80.556

85.714

0.69