Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OE104_RS13605 Genome accession   NZ_CP106878
Coordinates   2809961..2810452 (+) Length   163 a.a.
NCBI ID   WP_275417328.1    Uniprot ID   A0A9E8LU44
Organism   Fervidibacillus albus strain MEBiC13591     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2804961..2815452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OE104_RS13570 (OE104_13580) - 2805012..2805773 (+) 762 WP_275417321.1 ParA family protein -
  OE104_RS13575 (OE104_13585) - 2805766..2806620 (+) 855 WP_275417322.1 ParB/RepB/Spo0J family partition protein -
  OE104_RS13580 (OE104_13590) - 2806655..2807359 (+) 705 WP_275417323.1 DUF554 domain-containing protein -
  OE104_RS13585 (OE104_13595) yyaC 2807337..2807981 (-) 645 WP_275417324.1 spore protease YyaC -
  OE104_RS13590 (OE104_13600) - 2808147..2808353 (+) 207 WP_275417325.1 DUF951 domain-containing protein -
  OE104_RS13595 (OE104_13605) ychF 2808394..2809494 (+) 1101 WP_275417326.1 redox-regulated ATPase YchF -
  OE104_RS13600 (OE104_13610) rpsF 2809635..2809922 (+) 288 WP_275417327.1 30S ribosomal protein S6 -
  OE104_RS13605 (OE104_13615) ssbA 2809961..2810452 (+) 492 WP_275417328.1 single-stranded DNA-binding protein Machinery gene
  OE104_RS13610 (OE104_13620) rpsR 2810547..2810789 (+) 243 WP_338030311.1 30S ribosomal protein S18 -
  OE104_RS13615 (OE104_13625) - 2811193..2812131 (+) 939 WP_275417330.1 YybS family protein -
  OE104_RS13620 (OE104_13630) - 2812213..2814180 (+) 1968 WP_420842644.1 DHH family phosphoesterase -
  OE104_RS13625 (OE104_13635) rplI 2814181..2814630 (+) 450 WP_275417331.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18534.49 Da        Isoelectric Point: 4.8282

>NTDB_id=736383 OE104_RS13605 WP_275417328.1 2809961..2810452(+) (ssbA) [Fervidibacillus albus strain MEBiC13591]
MLNRVVLVGRLTKDPDLRYTPNGVPVATFTLAVNRTFTNQMGEREADFINCVVWRKQAENVANYLKKGSLAGVDGRLQTR
NYEAQDGRRVYVTEVVAESVQFLEPKSASNRDYRGSSSAYSNQPAPFENERQNQQRNPNIEKQPDPFFDDGQQIDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=736383 OE104_RS13605 WP_275417328.1 2809961..2810452(+) (ssbA) [Fervidibacillus albus strain MEBiC13591]
TTGTTGAATCGAGTAGTATTAGTTGGCCGTTTAACAAAGGACCCGGATCTACGCTATACTCCGAATGGCGTTCCCGTTGC
CACCTTTACATTGGCAGTTAATCGTACATTTACGAACCAAATGGGGGAACGGGAAGCGGATTTTATTAACTGTGTTGTTT
GGCGAAAACAAGCAGAAAACGTAGCAAACTATTTAAAAAAGGGCAGTTTGGCTGGTGTAGATGGCCGTCTACAAACGAGA
AATTATGAGGCACAGGATGGAAGACGTGTATACGTAACGGAAGTCGTCGCGGAATCCGTTCAATTTCTAGAACCGAAAAG
TGCGTCAAACCGCGATTATCGTGGCTCTTCTTCGGCTTACTCTAATCAACCTGCTCCATTTGAAAATGAGCGCCAGAATC
AACAAAGAAACCCCAACATCGAAAAACAGCCAGATCCGTTTTTTGATGACGGCCAACAAATTGATATTTCCGATGATGAT
TTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.023

100

0.718
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.595
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

65.031

0.417
  ssb Glaesserella parasuis strain SC1401

34.831

100

0.38
  ssb Neisseria gonorrhoeae MS11

34.091

100

0.368
  ssbA Streptococcus mutans UA159

40.816

90.184

0.368
  ssb Neisseria meningitidis MC58

33.523

100

0.362