Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   NBH81_RS17710 Genome accession   NZ_CP106828
Coordinates   3817561..3817881 (+) Length   106 a.a.
NCBI ID   WP_158110226.1    Uniprot ID   -
Organism   Aeromonas veronii strain jsyz553301     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3812561..3822881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBH81_RS17695 (NBH81_17695) yfbV 3813000..3813440 (-) 441 WP_043851809.1 terminus macrodomain insulation protein YfbV -
  NBH81_RS17700 (NBH81_17700) - 3813745..3814947 (+) 1203 WP_005349210.1 acetate kinase -
  NBH81_RS17705 (NBH81_17705) pta 3815002..3817182 (+) 2181 WP_005339119.1 phosphate acetyltransferase -
  NBH81_RS17710 (NBH81_17710) comE1/comEA 3817561..3817881 (+) 321 WP_158110226.1 ComEA family DNA-binding protein Machinery gene
  NBH81_RS17715 (NBH81_17715) galU 3817978..3818889 (+) 912 WP_005339121.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NBH81_RS17720 (NBH81_17720) - 3819103..3820500 (+) 1398 WP_040065012.1 peptide MFS transporter -
  NBH81_RS17725 (NBH81_17725) - 3820574..3821545 (-) 972 WP_144713690.1 response regulator -
  NBH81_RS17730 (NBH81_17730) - 3821786..3822484 (+) 699 WP_139399048.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11332.30 Da        Isoelectric Point: 9.6564

>NTDB_id=735957 NBH81_RS17710 WP_158110226.1 3817561..3817881(+) (comE1/comEA) [Aeromonas veronii strain jsyz553301]
MLMKKLSAVMLLACLPLFSQPVLAADKATPKQTTTTEVAKESGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=735957 NBH81_RS17710 WP_158110226.1 3817561..3817881(+) (comE1/comEA) [Aeromonas veronii strain jsyz553301]
ATGCTGATGAAGAAGCTCTCTGCTGTCATGCTGCTGGCCTGCTTGCCACTGTTCAGCCAACCTGTGCTGGCCGCAGATAA
GGCCACGCCCAAGCAAACAACCACAACCGAGGTCGCCAAGGAGTCCGGCAAGCTGAATATCAATACGGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCTGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

49.107

100

0.519
  comEA/comE1 Glaesserella parasuis strain SC1401

46.903

100

0.5
  comEA Vibrio cholerae strain A1552

46.226

100

0.462
  comEA Vibrio cholerae C6706

46.226

100

0.462
  comEA Vibrio parahaemolyticus RIMD 2210633

44

94.34

0.415
  comEA Acinetobacter baylyi ADP1

51.316

71.698

0.368
  comEA Legionella pneumophila str. Paris

39.394

93.396

0.368
  comEA Legionella pneumophila strain ERS1305867

39.394

93.396

0.368