Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   OCL39_RS09535 Genome accession   NZ_CP106805
Coordinates   1816620..1817072 (+) Length   150 a.a.
NCBI ID   WP_317629393.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10743     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1811620..1822072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL39_RS09505 (OCL39_09505) metG 1812466..1814520 (+) 2055 WP_260237142.1 methionine--tRNA ligase -
  OCL39_RS09510 (OCL39_09510) - 1814595..1814909 (-) 315 Protein_1836 NAD(P)-dependent oxidoreductase -
  OCL39_RS12140 (OCL39_09515) - 1814907..1815218 (+) 312 Protein_1837 pilin -
  OCL39_RS09525 (OCL39_09525) - 1815427..1815780 (+) 354 Protein_1838 pilin -
  OCL39_RS09530 (OCL39_09530) - 1815762..1816108 (+) 347 Protein_1839 pilin -
  OCL39_RS09535 (OCL39_09535) pilE 1816620..1817072 (+) 453 WP_317629393.1 pilin Machinery gene
  OCL39_RS11970 - 1817073..1817837 (+) 765 WP_317629396.1 pilin -
  OCL39_RS09550 (OCL39_09550) thiC 1818326..1820227 (-) 1902 WP_197097900.1 phosphomethylpyrimidine synthase ThiC -
  OCL39_RS09560 (OCL39_09560) - 1820825..1821700 (+) 876 WP_003686971.1 NUDIX hydrolase family protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16493.79 Da        Isoelectric Point: 10.2225

>NTDB_id=735446 OCL39_RS09535 WP_317629393.1 1816620..1817072(+) (pilE) [Neisseria gonorrhoeae strain 10743]
MRRQTRIPARAQVSEAILLAEGQKSAITEYYLNHGTWPEDNTSAGVASPAEIKGKYVKSVTVAKGVVTAEMKPSGVNKEI
QGKKLSLWGRRENGSVKWFCGQPVTRGNAKDDTVADDATAGNNKIDTKHLPSTCRDLPRYVICQIRQIRP

Nucleotide


Download         Length: 453 bp        

>NTDB_id=735446 OCL39_RS09535 WP_317629393.1 1816620..1817072(+) (pilE) [Neisseria gonorrhoeae strain 10743]
CTGCGCCGACAGACCCGGATTCCCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCAT
CACCGAGTATTACCTGAATCACGGCACATGGCCGGAAGACAACACTTCTGCCGGCGTGGCATCCCCCGCCGAAATCAAAG
GCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCGAAATGAAACCAAGCGGCGTAAACAAAGAAATC
CAAGGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGG
CAACGCCAAAGACGACACCGTTGCCGACGACGCCACCGCCGGCAACAACAAAATCGACACCAAGCACCTGCCGTCAACCT
GCCGTGACCTGCCGCGATACGTCATCTGCCAAATAAGGCAAATTAGGCCTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(9-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

79.845

86

0.687
  pilE Neisseria gonorrhoeae strain FA1090

78.125

85.333

0.667