Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   N9L84_RS27180 Genome accession   NZ_CP106785
Coordinates   5946246..5948324 (-) Length   692 a.a.
NCBI ID   WP_263151514.1    Uniprot ID   -
Organism   Pseudomonas tohonis strain G5.110     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5941246..5953324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N9L84_RS27165 (N9L84_27165) - 5942885..5944558 (-) 1674 WP_263151511.1 AAA family ATPase -
  N9L84_RS27170 (N9L84_27170) aroB 5944569..5945672 (-) 1104 WP_263151512.1 3-dehydroquinate synthase -
  N9L84_RS27175 (N9L84_27175) aroK 5945724..5946240 (-) 517 Protein_5380 shikimate kinase AroK -
  N9L84_RS27180 (N9L84_27180) pilQ 5946246..5948324 (-) 2079 WP_263151514.1 type IV pilus secretin PilQ Machinery gene
  N9L84_RS27185 (N9L84_27185) pilP 5948378..5948911 (-) 534 WP_173171170.1 type 4a pilus biogenesis lipoprotein PilP -
  N9L84_RS27190 (N9L84_27190) pilO 5948908..5949531 (-) 624 WP_173171168.1 type 4a pilus biogenesis protein PilO -
  N9L84_RS27195 (N9L84_27195) - 5949528..5950100 (-) 573 WP_173171166.1 PilN domain-containing protein -
  N9L84_RS27200 (N9L84_27200) pilM 5950100..5951164 (-) 1065 WP_173171164.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 74212.32 Da        Isoelectric Point: 4.9296

>NTDB_id=735125 N9L84_RS27180 WP_263151514.1 5946246..5948324(-) (pilQ) [Pseudomonas tohonis strain G5.110]
MNSSLSRFGLTLLAAMLSPVLLAADLQGLDVAALPGGKVELKLAFDEPVVAPRGYTIEQPARIALDLPGVTNKLGSKNRE
LGVGNARSVTIVEAKDRTRMIINLATLVPYSTRVEGKNLYVVVGEAGGATQQATRTSPVAAPVAPAAPVKTFAAAGKAIS
NIDFQRGDQGEGNVVITLSDPTVSPDIQEQGGKIRLDFAKTQLPESLRVRLDVKDFATPVQFVSAAGSSGNASITIEPTG
FYDYLAYQTDNKLTVSIKPLTQEDVEKRKSERFAYSGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITLRLQN
VPWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESQKQIAELAPLRRELIQVNYAKAADIAKLFQSVTSGNE
SSDERGSITVDDRTNSIIAYQTQDKLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVNWRGARVGDNNFVIGGEG
GTRTGGGGTSPNAALGTFVDMGATGATSSIGIGFVTDNTILDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGAEIPY
QEASSSGASTTSFKEAALSLEVTPQITPDNRIIMEVKVTKDAPDFSNALNGVPPINKNEVNAKVLVSDGETIVIGGVFSN
TQTKATDKVPFLGDLPFLGRMFKRDVVQDKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=735125 N9L84_RS27180 WP_263151514.1 5946246..5948324(-) (pilQ) [Pseudomonas tohonis strain G5.110]
ATGAACAGCTCGCTTTCGCGCTTCGGCCTTACCCTATTGGCCGCCATGTTGTCGCCAGTATTGCTGGCTGCCGACCTGCA
GGGTCTCGATGTGGCAGCCTTGCCTGGCGGTAAGGTTGAACTGAAACTTGCCTTCGACGAGCCGGTTGTCGCGCCTCGGG
GCTATACCATCGAGCAGCCTGCGCGTATTGCCCTGGACCTGCCCGGGGTGACCAACAAACTGGGCAGCAAGAATCGCGAA
CTGGGTGTGGGCAACGCGCGGAGCGTGACCATAGTCGAGGCCAAGGATCGCACCCGGATGATTATCAACCTGGCGACACT
CGTGCCCTACAGCACGCGTGTCGAGGGTAAGAATCTCTATGTCGTGGTGGGTGAGGCGGGCGGTGCCACGCAGCAAGCGA
CCCGTACTTCTCCTGTTGCCGCTCCGGTAGCCCCCGCAGCTCCCGTCAAGACTTTCGCTGCGGCAGGCAAGGCCATCAGC
AACATTGATTTTCAGCGCGGTGATCAGGGTGAAGGCAATGTTGTAATCACGCTTTCCGATCCCACCGTAAGCCCGGATAT
TCAGGAACAGGGTGGCAAGATTCGCCTTGATTTCGCCAAGACCCAGCTGCCCGAGTCGTTGCGCGTGCGCCTGGATGTGA
AGGATTTCGCTACGCCGGTTCAGTTCGTCAGCGCAGCGGGTTCTTCAGGTAACGCCAGCATCACCATCGAGCCGACCGGC
TTCTACGATTACCTGGCCTATCAAACCGATAACAAGTTGACCGTCAGCATCAAGCCGTTGACGCAAGAAGATGTCGAGAA
GCGCAAGTCCGAGCGTTTTGCCTACTCGGGTGAAAAGCTCTCTTTGAACTTCCAGGACATCGATGTGCGTTCGGTGCTCC
AGCTGATCGCTGACTTCACCGACCTCAACCTGGTGGCCTCGGACACCGTGCAGGGCAATATCACGCTGCGCCTGCAGAAC
GTGCCCTGGGATCAGGCCTTGGACCTGGTGCTGAAAACCAAGGGGCTCGACAAGCGCAAGGTTGGCAACGTGCTGCTGGT
TGCACCGGCTGACGAAATTGCTGCTCGTGAGCGTCAAGAGCTGGAGTCCCAGAAGCAGATCGCCGAGTTGGCTCCGCTGC
GTCGTGAGCTGATTCAGGTGAACTACGCCAAGGCTGCCGATATCGCCAAGCTGTTCCAGTCCGTGACCAGTGGCAACGAG
TCGTCGGATGAGCGTGGTTCGATCACCGTGGATGACCGCACCAACAGCATCATCGCCTACCAGACCCAGGACAAGCTGGA
CGAACTGCGCCGCATCGTGGCCCAGCTCGATATCCCGGTCCGTCAGGTGATGATCGAGGCTCGTATCGTCGAGGCGAACG
TCGACTACGACAAATCGCTGGGTGTGAACTGGCGCGGTGCGCGTGTGGGTGACAACAACTTCGTCATCGGCGGGGAAGGT
GGCACTCGCACCGGTGGAGGTGGCACCAGCCCCAACGCGGCTCTTGGTACCTTTGTTGATATGGGGGCTACAGGTGCTAC
TTCCTCCATTGGCATCGGCTTCGTAACCGACAACACTATCCTCGACCTCGAACTCTCCGCCATGGAGAAGACCGGCAACG
GCGAGATCGTATCCCAGCCGAAGGTCGTAACTTCGGACAAGGAAACCGCGAAGATCCTGAAGGGTGCCGAGATTCCCTAC
CAGGAAGCCAGCTCCAGCGGTGCCAGTACCACGTCCTTCAAGGAAGCGGCCCTGTCCCTGGAAGTGACTCCGCAGATCAC
GCCTGACAACCGCATCATCATGGAAGTCAAGGTGACCAAGGATGCCCCGGACTTCTCCAACGCGCTGAACGGCGTACCGC
CGATCAACAAGAACGAGGTCAATGCCAAGGTTCTGGTCAGCGATGGCGAGACGATCGTGATCGGTGGTGTGTTCTCCAAC
ACCCAGACCAAGGCGACTGACAAGGTTCCCTTCCTTGGCGACTTGCCGTTCCTCGGCCGCATGTTCAAGCGTGATGTGGT
CCAGGACAAGAAATCCGAGCTGCTGGTCTTCCTCACCCCGCGTATCATGAACAACCAGGCTATTGCGGTGAGTCGCTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(527-683)

Secretin and TonB N terminus short domain (STN)

(303-349)

AMIN domain (AMIN)

(40-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

77.343

100

0.799
  comQ Acinetobacter baylyi ADP1

42.961

99.566

0.428
  pilQ Acinetobacter baumannii strain A118

39.756

100

0.423
  pilQ Acinetobacter baumannii D1279779

39.756

100

0.423
  pilQ Legionella pneumophila strain ERS1305867

38.336

97.254

0.373
  pilQ Legionella pneumophila strain Lp02

38.336

97.254

0.373