Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LLE27_RS11035 Genome accession   NZ_CP106782
Coordinates   2099830..2100327 (-) Length   165 a.a.
NCBI ID   WP_263055808.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10795     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2094830..2105327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE27_RS11010 (LLE27_11010) - 2094844..2095326 (+) 483 WP_003694396.1 CinA family protein -
  LLE27_RS11015 (LLE27_11015) msrAB 2095410..2096978 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  LLE27_RS11020 (LLE27_11020) pilA 2097124..2098377 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  LLE27_RS11025 (LLE27_11025) - 2098510..2098668 (+) 159 WP_154236104.1 hypothetical protein -
  LLE27_RS11030 (LLE27_11030) - 2098642..2099349 (-) 708 WP_229930215.1 opacity family porin -
  LLE27_RS11035 (LLE27_11035) pilE 2099830..2100327 (-) 498 WP_263055808.1 pilin Machinery gene
  LLE27_RS11040 (LLE27_11040) - 2100718..2101104 (-) 387 Protein_2125 pilin -
  LLE27_RS11970 - 2101237..2101337 (-) 101 Protein_2126 pilin -
  LLE27_RS11050 (LLE27_11050) pilE 2101874..2102287 (-) 414 WP_229930217.1 pilin Machinery gene
  LLE27_RS11055 (LLE27_11055) lpxC 2102393..2103316 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  LLE27_RS11065 (LLE27_11065) - 2103843..2104199 (-) 357 Protein_2129 pilin -
  LLE27_RS11070 (LLE27_11070) - 2104240..2104455 (-) 216 Protein_2130 pilin -
  LLE27_RS11075 (LLE27_11075) - 2104828..2104959 (-) 132 WP_010356054.1 hypothetical protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17844.48 Da        Isoelectric Point: 9.3166

>NTDB_id=735059 LLE27_RS11035 WP_263055808.1 2099830..2100327(-) (pilE) [Neisseria gonorrhoeae strain 10795]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPEDNDKAGVASASKII
GKYVQKVEVAKGVVTAKMKSDGVNKEIKDKRLSLWAKRENGSVKWFCGQPVTRADDAVTADTTGKDKIETKHLPSTCRDT
SSAGT

Nucleotide


Download         Length: 498 bp        

>NTDB_id=735059 LLE27_RS11035 WP_263055808.1 2099830..2100327(-) (pilE) [Neisseria gonorrhoeae strain 10795]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATCACGGCAAATGGCCGGAAGACAACGACAAGGCCGGCGTGGCATCCGCTTCAAAAATCATA
GGCAAATATGTTCAGAAAGTTGAAGTCGCAAAAGGCGTCGTCACCGCCAAAATGAAATCAGACGGCGTAAACAAAGAAAT
CAAAGACAAAAGACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCG
CCGACGACGCCGTCACCGCCGACACCACCGGCAAAGACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATACG
TCATCTGCCGGTACGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Pilin (bacterial filament) (Pilin)

(36-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

82.822

98.788

0.818
  pilE Neisseria gonorrhoeae MS11

80.368

98.788

0.794
  comP Acinetobacter baylyi ADP1

38.922

100

0.394
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

31.795

100

0.376
  pilA/pilA1 Eikenella corrodens VA1

36.095

100

0.37
  pilA2 Legionella pneumophila strain ERS1305867

38.462

94.545

0.364