Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LLE27_RS11050 Genome accession   NZ_CP106782
Coordinates   2101874..2102287 (-) Length   137 a.a.
NCBI ID   WP_229930217.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10795     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2096874..2107287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE27_RS11020 (LLE27_11020) pilA 2097124..2098377 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  LLE27_RS11025 (LLE27_11025) - 2098510..2098668 (+) 159 WP_154236104.1 hypothetical protein -
  LLE27_RS11030 (LLE27_11030) - 2098642..2099349 (-) 708 WP_229930215.1 opacity family porin -
  LLE27_RS11035 (LLE27_11035) pilE 2099830..2100327 (-) 498 WP_263055808.1 pilin Machinery gene
  LLE27_RS11040 (LLE27_11040) - 2100718..2101104 (-) 387 Protein_2125 pilin -
  LLE27_RS11970 - 2101237..2101337 (-) 101 Protein_2126 pilin -
  LLE27_RS11050 (LLE27_11050) pilE 2101874..2102287 (-) 414 WP_229930217.1 pilin Machinery gene
  LLE27_RS11055 (LLE27_11055) lpxC 2102393..2103316 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  LLE27_RS11065 (LLE27_11065) - 2103843..2104199 (-) 357 Protein_2129 pilin -
  LLE27_RS11070 (LLE27_11070) - 2104240..2104455 (-) 216 Protein_2130 pilin -
  LLE27_RS11075 (LLE27_11075) - 2104828..2104959 (-) 132 WP_010356054.1 hypothetical protein -
  LLE27_RS11080 (LLE27_11080) - 2105041..2105729 (-) 689 Protein_2132 SprT family zinc-dependent metalloprotease -
  LLE27_RS11085 (LLE27_11085) - 2105726..2106469 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  LLE27_RS11090 (LLE27_11090) gmhB 2106499..2107062 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14929.77 Da        Isoelectric Point: 8.4809

>NTDB_id=735060 LLE27_RS11050 WP_229930217.1 2101874..2102287(-) (pilE) [Neisseria gonorrhoeae strain 10795]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPEDNDKAGVASPDKIIGKYVKQVEVKNGVVTAEMASTGVNKEIQ
GKKLSLWARRQAGSVKWFCGQPVKRAAKDNDTVANDATNAIETKHLPSTCRDPFSAS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=735060 LLE27_RS11050 WP_229930217.1 2101874..2102287(-) (pilE) [Neisseria gonorrhoeae strain 10795]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCAAATGGCCGGAAGACAACGACAAGGCCGGCGTGGCATCCCCCGACAAAATCATAGGCA
AATATGTTAAGCAAGTTGAAGTCAAAAACGGCGTCGTCACCGCCGAAATGGCTTCAACCGGCGTAAACAAAGAAATCCAA
GGCAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGCCGC
CAAAGACAACGACACCGTTGCCAACGACGCCACCAACGCCATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGACCCGT
TCTCTGCTAGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

71.223

100

0.723
  pilE Neisseria gonorrhoeae strain FA1090

71.739

100

0.723