Detailed information NTG0073500

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: FNL60_RS01240
• Genome accession: NZ_AP019720
• Coordinates: 239593..239997 (+)
• Length: 134 a.a.
• NCBI ID: WP_002264246.1
• Uniprot ID: -
• Organism: Streptococcus mutans strain NBRC 13955
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 234593..244997

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNL60_RS01220 (SM3g_02080)	-	236871..237254 (+)	384	WP_002264248.1	DUF1033 family protein	-
FNL60_RS01225 (SM3g_02090)	comYA	237384..238325 (+)	942	WP_002264247.1	competence type IV pilus ATPase ComGA	Machinery gene
FNL60_RS01230 (SM3g_02100)	comYB	238261..239292 (+)	1032	WP_255262721.1	competence type IV pilus assembly protein ComGB	Machinery gene
FNL60_RS01235 (SM3g_02110)	comYC	239292..239606 (+)	315	WP_002263437.1	competence type IV pilus major pilin ComGC	Machinery gene
FNL60_RS01240 (SM3g_02120)	comYD	239593..239997 (+)	405	WP_002264246.1	competence type IV pilus minor pilin ComGD	Machinery gene
FNL60_RS01245 (SM3g_02130)	comYE	239969..240262 (+)	294	WP_002263439.1	competence type IV pilus minor pilin ComGE	Machinery gene
FNL60_RS01250 (SM3g_02140)	comYF	240249..240683 (+)	435	WP_002264245.1	competence type IV pilus minor pilin ComGF	Machinery gene
FNL60_RS01255 (SM3g_02150)	comYG	240661..241050 (+)	390	WP_002263441.1	competence type IV pilus minor pilin ComGG	Machinery gene
FNL60_RS01260 (SM3g_02160)	comYH	241105..242058 (+)	954	WP_002264244.1	class I SAM-dependent methyltransferase	Machinery gene
FNL60_RS01265 (SM3g_02170)	-	242117..243316 (+)	1200	WP_002263443.1	acetate kinase	-
FNL60_RS01270 (SM3g_02180)	-	243869..244114 (+)	246	WP_002263444.1	helix-turn-helix transcriptional regulator	-
FNL60_RS01275 (SM3g_02190)	-	244083..244523 (+)	441	WP_002263445.1	hypothetical protein	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 15425.73 Da
• Isoelectric Point: 9.2271

>NTDB_id=73500 FNL60_RS01240 WP_002264246.1 239593..239997(+) (comYD) [Streptococcus mutans strain NBRC 13955]
MSRIKAFTLIESLVTLAITSFLILSFSGSITQTFAKVEEHLFFLSFEHLYRDTQKLSVYQRQDMTLILKSEYISNGVEVL
KIPKDVKLERNKTLHFDQAGGNSSLEKLVFQTSDEKRVTYQLYIGSGQYKKTES

Nucleotide

• Length: 405 bp

>NTDB_id=73500 FNL60_RS01240 WP_002264246.1 239593..239997(+) (comYD) [Streptococcus mutans strain NBRC 13955]
ATGTCGCGAATTAAAGCTTTTACGCTTATAGAAAGTTTAGTGACTTTGGCAATTACTAGTTTTTTGATTTTAAGCTTTTC
AGGTAGTATAACTCAAACGTTTGCCAAAGTAGAAGAGCATCTCTTTTTTCTTTCTTTTGAACATCTTTACCGTGACACGC
AAAAACTTAGTGTTTATCAAAGACAAGATATGACTTTAATATTAAAAAGCGAATATATCTCAAATGGTGTTGAAGTACTT
AAAATCCCTAAGGATGTCAAACTAGAGAGGAATAAAACTTTGCACTTTGATCAGGCAGGAGGAAATTCTTCTTTAGAAAA
ACTTGTTTTTCAAACATCTGATGAAAAAAGAGTTACTTATCAATTATATATAGGAAGTGGTCAGTATAAAAAAACAGAAA
GTTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-25)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	99.254	100	0.993
comYD	Streptococcus mutans UA159	99.254	100	0.993
comYD	Streptococcus gordonii str. Challis substr. CH1	50.388	96.269	0.485
comGD/cglD	Streptococcus mitis NCTC 12261	49.612	96.269	0.478
comGD/cglD	Streptococcus pneumoniae Rx1	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae D39	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae R6	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae TIGR4	48.438	95.522	0.463
comGD/cglD	Streptococcus mitis SK321	48.438	95.522	0.463
comGD	Lactococcus lactis subsp. cremoris KW2	39.394	98.507	0.388