Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   P4B20_RS02540 Genome accession   NZ_CP120706
Coordinates   558104..558829 (-) Length   241 a.a.
NCBI ID   WP_023129226.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY11104     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 553104..563829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4B20_RS02515 (P4B20_02515) - 553576..554091 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  P4B20_RS02520 (P4B20_02520) rarD 554781..555677 (-) 897 WP_003103301.1 EamA family transporter RarD -
  P4B20_RS02525 (P4B20_02525) - 555880..556854 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  P4B20_RS02530 (P4B20_02530) - 556916..557674 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  P4B20_RS02535 (P4B20_02535) - 557742..558062 (-) 321 WP_003117926.1 YfiM family lipoprotein -
  P4B20_RS02540 (P4B20_02540) comF 558104..558829 (-) 726 WP_023129226.1 ComF family protein Machinery gene
  P4B20_RS02545 (P4B20_02545) - 558968..559261 (-) 294 WP_003113255.1 hypothetical protein -
  P4B20_RS02550 (P4B20_02550) - 559315..560241 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  P4B20_RS02555 (P4B20_02555) - 560359..561117 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  P4B20_RS02560 (P4B20_02560) - 561194..561442 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  P4B20_RS02565 (P4B20_02565) - 561453..562829 (+) 1377 WP_003084815.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  P4B20_RS02570 (P4B20_02570) - 562831..563709 (+) 879 WP_043494556.1 allophanate hydrolase subunit 1 -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27101.61 Da        Isoelectric Point: 11.0325

>NTDB_id=734161 P4B20_RS02540 WP_023129226.1 558104..558829(-) (comF) [Pseudomonas aeruginosa strain NY11104]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQMCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLHCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=734161 P4B20_RS02540 WP_023129226.1 558104..558829(-) (comF) [Pseudomonas aeruginosa strain NY11104]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGTTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGATGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCACTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382