Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   N8S79_RS12470 Genome accession   NZ_CP106678
Coordinates   2596929..2597927 (-) Length   332 a.a.
NCBI ID   WP_046850365.1    Uniprot ID   A0A0F7KCR6
Organism   Nitrosomonas sp. PLL12-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2591929..2602927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8S79_RS12440 - 2591971..2592798 (+) 828 WP_046848692.1 IS3 family transposase -
  N8S79_RS12445 - 2592874..2593584 (+) 711 WP_052752225.1 IS5 family transposase -
  N8S79_RS12455 rpoH 2594096..2594944 (-) 849 WP_046850362.1 RNA polymerase sigma factor RpoH -
  N8S79_RS12460 ftsX 2595329..2596237 (-) 909 WP_046850363.1 permease-like cell division protein FtsX -
  N8S79_RS12465 ftsE 2596234..2596887 (-) 654 WP_046850364.1 cell division ATP-binding protein FtsE -
  N8S79_RS12470 pilA 2596929..2597927 (-) 999 WP_046850365.1 signal recognition particle-docking protein FtsY Machinery gene
  N8S79_RS12475 alr 2598321..2599412 (+) 1092 WP_046850366.1 alanine racemase -
  N8S79_RS12480 - 2599448..2600245 (-) 798 WP_046850367.1 peptidyl-prolyl cis-trans isomerase -
  N8S79_RS12485 - 2600411..2600713 (-) 303 WP_046850368.1 YciI family protein -
  N8S79_RS12490 - 2601078..2602025 (+) 948 WP_046850369.1 DnaJ C-terminal domain-containing protein -
  N8S79_RS12495 - 2602026..2602349 (+) 324 WP_046850370.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 36036.27 Da        Isoelectric Point: 7.3218

>NTDB_id=734073 N8S79_RS12470 WP_046850365.1 2596929..2597927(-) (pilA) [Nitrosomonas sp. PLL12-2]
MFSLFKSKKNSTDKSSAEDNSKTESWTSKIRQGLARTRQNFGKQLSSLLSSRKIDEALYDELETILLTADAGVNATNLLL
DALRKKVKRDALNNAEQLKEALQETLINLLAPLAQPLDVTTKKPFIIMITGVNGVGKTTTIGKLAHYFQSQGKSVLLAAG
DTFRAAAREQLLAWGERNNVTVIAQESDSQKKSDPAAVIFDAINAAKARDIDIVLADTAGRLTTQMHLMEEIKKIKRVIN
KALPDAPHEVLLVLDANTGQNALNQLKAFDEALGVSGLVLTKLDGTAKGGVIAAIAAQYPQNPPALRFIGIGEGLEDLRP
FDAQEFVEAIFD

Nucleotide


Download         Length: 999 bp        

>NTDB_id=734073 N8S79_RS12470 WP_046850365.1 2596929..2597927(-) (pilA) [Nitrosomonas sp. PLL12-2]
ATGTTTAGTCTTTTTAAATCTAAAAAAAATTCTACTGACAAAAGTTCCGCTGAGGACAATTCTAAGACGGAGAGTTGGAC
AAGTAAAATCAGACAAGGGCTTGCTCGAACCCGGCAGAACTTTGGCAAGCAATTATCTAGCTTGTTAAGTAGTCGCAAAA
TAGATGAGGCACTCTACGATGAACTTGAGACGATTTTGCTTACAGCAGATGCTGGCGTGAATGCTACTAATTTGCTGCTG
GATGCATTACGTAAGAAAGTAAAACGAGATGCGCTGAACAACGCGGAGCAGCTTAAAGAAGCACTTCAAGAAACTTTAAT
CAATTTGCTTGCTCCATTGGCTCAACCGCTTGACGTGACGACCAAGAAGCCATTTATCATTATGATAACGGGCGTAAATG
GGGTCGGTAAAACAACTACCATTGGCAAACTTGCTCATTATTTTCAATCGCAGGGTAAATCAGTATTGCTGGCTGCTGGT
GATACATTTCGTGCGGCAGCACGAGAACAATTATTGGCATGGGGTGAACGCAATAATGTGACAGTTATCGCACAGGAAAG
TGATTCTCAGAAAAAAAGTGATCCTGCCGCTGTCATATTCGATGCCATCAATGCAGCTAAAGCACGTGATATTGATATAG
TACTGGCTGATACTGCTGGCCGTTTGACGACCCAAATGCATCTGATGGAAGAGATTAAAAAGATCAAACGAGTGATCAAC
AAGGCGTTACCAGATGCCCCCCATGAGGTCTTGTTAGTATTAGATGCCAATACAGGTCAGAATGCACTTAATCAGCTCAA
AGCCTTTGATGAAGCCCTTGGCGTGAGCGGCTTAGTCCTTACCAAACTGGATGGGACTGCCAAAGGGGGTGTAATAGCTG
CGATAGCCGCCCAATATCCACAAAATCCTCCTGCTTTACGCTTTATCGGAATAGGGGAGGGGTTAGAAGATCTGAGGCCT
TTTGATGCGCAAGAATTTGTCGAGGCAATATTTGATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(41-106)

SRP54-type protein, GTPase domain (SRP54)

(125-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F7KCR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

59.871

93.072

0.557