Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   N7988_RS25575 Genome accession   NZ_CP106675
Coordinates   4961643..4962224 (+) Length   193 a.a.
NCBI ID   WP_001049162.1    Uniprot ID   A0A9W5QPC2
Organism   Bacillus cereus strain SRCM116293     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4956643..4967224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7988_RS25540 (N7988_25540) - 4957636..4957842 (+) 207 WP_000216166.1 DUF1657 domain-containing protein -
  N7988_RS25545 (N7988_25545) - 4957936..4958424 (+) 489 WP_001226064.1 YhcN/YlaJ family sporulation lipoprotein -
  N7988_RS25550 (N7988_25550) spoVAC 4958454..4958930 (+) 477 WP_000095408.1 stage V sporulation protein AC -
  N7988_RS25555 (N7988_25555) spoVAD 4958931..4959947 (+) 1017 WP_000938972.1 stage V sporulation protein AD -
  N7988_RS25560 (N7988_25560) spoVAE 4959944..4960294 (+) 351 WP_000575919.1 stage V sporulation protein AE -
  N7988_RS25565 (N7988_25565) - 4960306..4960512 (+) 207 WP_000215909.1 DUF1657 domain-containing protein -
  N7988_RS25570 (N7988_25570) - 4960533..4961402 (+) 870 WP_000018924.1 DUF421 domain-containing protein -
  N7988_RS25575 (N7988_25575) clpP 4961643..4962224 (+) 582 WP_001049162.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  N7988_RS25580 (N7988_25580) - 4962678..4962926 (-) 249 WP_000250307.1 HPr family phosphocarrier protein -
  N7988_RS25585 (N7988_25585) whiA 4962950..4963900 (-) 951 WP_000006560.1 DNA-binding protein WhiA -
  N7988_RS25590 (N7988_25590) - 4963989..4964942 (-) 954 WP_000712186.1 YvcK family protein -
  N7988_RS25595 (N7988_25595) rapZ 4964946..4965827 (-) 882 WP_000138459.1 RNase adapter RapZ -
  N7988_RS25600 (N7988_25600) - 4965848..4966306 (-) 459 WP_001190080.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21419.67 Da        Isoelectric Point: 5.0423

>NTDB_id=734051 N7988_RS25575 WP_001049162.1 4961643..4962224(+) (clpP) [Bacillus cereus strain SRCM116293]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAEKALEYGLIDKIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=734051 N7988_RS25575 WP_001049162.1 4961643..4962224(+) (clpP) [Bacillus cereus strain SRCM116293]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAAGA
CCGCATCATTATGCTTGGTAGTGCAATTGATGACAACGTAGCTAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCAGAAAAAGATATTCACATCTACATCAACAGCCCTGGTGGTTCTATCACAGCAGGTATGGCAATCTATGATACA
ATGCAGTTTATTAAACCACAAGTATCAACAATCTGTATCGGTATGGCAGCATCTATGGGTGCATTCTTACTTGCAGCAGG
TGAAAAAGGAAAACGTTATGCACTTCCAAACAGTGAAGTAATGATTCACCAACCACTTGGCGGAGCACAAGGTCAAGCGA
CTGAAATCGAAATCGCTGCAAAACGTATCCTATTCTTACGTGAAAAACTAAACCAAATTCTTGCTGACCGCACTGGTCAA
CCACTTGAAGTACTACAACGCGATACAGACCGCGACAACTTCATGACAGCAGAAAAAGCTTTAGAATACGGTTTAATCGA
TAAAATCTTTACAAATCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

90.104

99.482

0.896
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.021

97.409

0.653
  clpP Streptococcus thermophilus LMG 18311

60.417

99.482

0.601
  clpP Streptococcus thermophilus LMD-9

60.417

99.482

0.601
  clpP Lactococcus lactis subsp. cremoris KW2

58.854

99.482

0.585
  clpP Streptococcus pneumoniae D39

57.292

99.482

0.57
  clpP Streptococcus pneumoniae Rx1

57.292

99.482

0.57
  clpP Streptococcus pneumoniae R6

57.292

99.482

0.57
  clpP Streptococcus pneumoniae TIGR4

57.292

99.482

0.57
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

56.771

99.482

0.565
  clpP Streptococcus pyogenes JRS4

55.729

99.482

0.554
  clpP Streptococcus pyogenes MGAS315

55.729

99.482

0.554
  clpP Streptococcus mutans UA159

55.44

100

0.554