Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   P5628_RS14495 Genome accession   NZ_CP120577
Coordinates   2760099..2761871 (-) Length   590 a.a.
NCBI ID   WP_014480497.1    Uniprot ID   -
Organism   Bacillus subtilis strain PRO53     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2755099..2766871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS14475 (P5628_14475) sdhA 2755318..2757078 (-) 1761 WP_003229567.1 succinate dehydrogenase flavoprotein subunit -
  P5628_RS14480 (P5628_14480) sdhC 2757112..2757720 (-) 609 WP_003222512.1 succinate dehydrogenase cytochrome B558 -
  P5628_RS14485 (P5628_14485) yslB 2758013..2758459 (+) 447 WP_003222508.1 YslB family protein -
  P5628_RS14490 (P5628_14490) lysCA 2758503..2759729 (-) 1227 WP_024572581.1 aspartate kinase -
  P5628_RS14495 (P5628_14495) uvrC 2760099..2761871 (-) 1773 WP_014480497.1 excinuclease ABC subunit UvrC Machinery gene
  P5628_RS14500 (P5628_14500) trxA 2762007..2762321 (-) 315 WP_003222500.1 thioredoxin -
  P5628_RS14505 (P5628_14505) abfB 2762644..2764131 (-) 1488 WP_072173638.1 alpha-L-arabinofuranosidase AbfB -
  P5628_RS14510 (P5628_14510) etfA 2764349..2765326 (-) 978 WP_072173597.1 electron transfer flavoprotein subunit alpha -
  P5628_RS14515 (P5628_14515) etfB 2765362..2766135 (-) 774 WP_277708877.1 electron transfer flavoprotein subunit beta -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68486.30 Da        Isoelectric Point: 9.4732

>NTDB_id=732728 P5628_RS14495 WP_014480497.1 2760099..2761871(-) (uvrC) [Bacillus subtilis strain PRO53]
MNKQLKEKLALLPDQPGCYLMKDRQQTVIYVGKAKVLKNRVRSYFTGSHDAKTQRLVTEIEDFEYIVTSSNLEALILEMN
LIKKHDPKYNVMLKDDKTYPFIKLTHERHPRLIVTRNVKKDKGRYFGPYPNVQAARETKKLLDRLYPLRKCSKLPDRVCL
YYHLGQCLAPCVKDISEETNRELVESITRFLRGGYNEVKKELEEKMHEAAENLEFERAKELRDQIAHIESTMEKQKMTMN
DLVDRDVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPLYQEADEEFLTFIGQFYSKNNHFLPKEILVPDSVDQSMIEQL
LETNVHQPKKGPKKELLMLAHKNAKIALKEKFSLIERDEERSIGAVQKLGEALNIYTPHRIEAFDNSNIQGTNPVSAMIV
FIDGKPYKKEYRKYKIKTVTGPDDYGSMREVVRRRYTRVLRENLPLPDLIIIDGGKGQINAARDVIENELGLDIPIAGLA
KDEKHRTSNLLIGDPLEVVYLERNSQEFYLLQRIQDEVHRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSV
KKMKEASLEDIKKAGVPAAAAQLLYDKLQK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=732728 P5628_RS14495 WP_014480497.1 2760099..2761871(-) (uvrC) [Bacillus subtilis strain PRO53]
ATGAACAAACAACTGAAAGAAAAACTCGCCCTCCTTCCCGATCAACCGGGTTGTTATCTCATGAAGGACCGGCAGCAGAC
TGTGATCTACGTAGGGAAAGCAAAAGTGCTGAAAAACAGAGTGCGCTCCTACTTCACCGGTTCTCACGACGCGAAAACCC
AAAGGCTTGTGACGGAAATCGAGGATTTTGAATATATCGTGACGTCCTCCAATCTTGAAGCGCTTATTTTAGAAATGAAT
CTGATCAAAAAGCATGATCCGAAATACAACGTCATGCTCAAAGACGACAAAACCTATCCTTTCATAAAACTCACCCATGA
ACGCCACCCAAGGCTGATTGTCACCCGCAATGTCAAAAAAGACAAAGGGCGCTATTTCGGGCCTTATCCGAATGTACAGG
CAGCAAGGGAAACAAAAAAACTGCTCGACCGTCTGTATCCTCTCAGAAAATGCTCCAAGCTCCCGGACAGAGTGTGCCTT
TACTATCATCTGGGCCAATGCCTCGCTCCGTGCGTAAAGGATATTTCCGAAGAGACGAACAGAGAGCTGGTTGAAAGCAT
TACACGTTTCTTAAGGGGCGGCTATAATGAGGTCAAAAAAGAGCTTGAAGAGAAAATGCATGAAGCTGCTGAGAATCTTG
AGTTTGAACGAGCAAAAGAGCTTCGTGACCAAATTGCCCATATTGAATCAACGATGGAAAAACAAAAAATGACGATGAAC
GATCTAGTCGACCGTGATGTATTCGCGTACGCGTACGATAAGGGCTGGATGTGCGTGCAGGTCTTTTTCATCCGCCAAGG
GAAGCTCATTGAACGCGATGTCAGCATGTTCCCGCTTTATCAGGAAGCAGATGAAGAGTTCCTCACGTTCATCGGGCAGT
TTTATTCAAAAAACAACCACTTCCTTCCGAAAGAGATTTTAGTTCCGGACAGCGTAGATCAATCCATGATCGAGCAGCTG
CTGGAAACAAACGTTCACCAGCCGAAGAAAGGCCCGAAAAAAGAACTGCTCATGCTTGCCCATAAAAATGCGAAAATCGC
ATTGAAAGAAAAATTCTCTTTAATCGAACGCGACGAGGAGCGTTCAATCGGGGCTGTGCAGAAACTAGGTGAGGCATTAA
ATATTTATACGCCGCACAGAATTGAAGCGTTTGATAACTCAAACATACAGGGGACAAACCCGGTTTCCGCGATGATTGTG
TTTATCGACGGCAAACCATACAAAAAGGAATACCGCAAATATAAAATCAAAACCGTTACAGGGCCGGATGATTACGGTTC
TATGAGAGAGGTTGTCAGAAGACGCTATACGAGAGTGCTTCGTGAGAATCTGCCGCTGCCCGATCTGATCATCATTGACG
GAGGAAAAGGGCAGATCAACGCAGCAAGGGATGTCATTGAAAATGAACTCGGCTTGGATATCCCGATCGCCGGTTTAGCG
AAAGATGAAAAACACAGAACCTCAAATTTACTGATCGGTGATCCGCTGGAGGTAGTGTATCTGGAACGAAACAGCCAGGA
ATTTTACCTCCTGCAGCGCATTCAGGACGAGGTGCACCGTTTTGCAATCAGTTTTCACAGGCAAATCCGCGGAAAAAGCG
CGTTTCAATCCGTTTTGGACGACATCCCGGGTATCGGAGAGAAAAGAAAGAAAATGCTGTTAAAGCATTTCGGTTCCGTT
AAAAAAATGAAGGAAGCAAGCCTTGAGGACATCAAAAAAGCCGGTGTTCCCGCAGCGGCGGCTCAGCTCCTTTACGACAA
ATTGCAAAAATAA

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(16-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-523)

UvrB/uvrC motif (UVR)

(197-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

59.354

99.661

0.592
  uvrC Streptococcus pneumoniae R6

59.014

99.661

0.588
  uvrC Streptococcus pneumoniae D39

59.014

99.661

0.588