Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   N5P16_RS03475 Genome accession   NZ_CP104734
Coordinates   766514..768643 (+) Length   709 a.a.
NCBI ID   WP_004923730.1    Uniprot ID   -
Organism   Acinetobacter baylyi strain JAT2044     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 761514..773643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P16_RS03455 (N5P16_03455) comM 763500..764561 (+) 1062 WP_004923715.1 pilus assembly protein PilM Machinery gene
  N5P16_RS03460 (N5P16_03460) comN 764558..765196 (+) 639 WP_004923716.1 PilN domain-containing protein Machinery gene
  N5P16_RS03465 (N5P16_03465) comO 765193..765930 (+) 738 WP_004923719.1 type 4a pilus biogenesis protein PilO Machinery gene
  N5P16_RS03470 (N5P16_03470) comL 765930..766454 (+) 525 WP_004923726.1 pilus assembly protein PilP Machinery gene
  N5P16_RS03475 (N5P16_03475) comQ 766514..768643 (+) 2130 WP_004923730.1 type IV pilus secretin PilQ Machinery gene
  N5P16_RS03480 (N5P16_03480) aroK 768680..769222 (+) 543 WP_004923733.1 shikimate kinase AroK -
  N5P16_RS03485 (N5P16_03485) aroB 769244..770332 (+) 1089 WP_004923735.1 3-dehydroquinate synthase -
  N5P16_RS03490 (N5P16_03490) - 770342..771193 (+) 852 WP_004923737.1 hypothetical protein -

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 76671.12 Da        Isoelectric Point: 6.3475

>NTDB_id=731690 N5P16_RS03475 WP_004923730.1 766514..768643(+) (comQ) [Acinetobacter baylyi strain JAT2044]
MKQIIRQFSIGTVAYAIMQVASAQVAITNVVPMNIPGQGTEIRVMFNGLPPQPQAYQLEQPARLILDFDKAGQKLAKSLI
PVTTNEASSIDVSSDDKRARVVVNLKDAGAFTTRVEGNVFILKINNIQSTATPVATSAPAPQQGIGNIGFQRGAQGEGLV
VIDLQGTNTPVDVQQQGSKVVVRFPGIKIPTHLARRLNTTDFATPVASIDSYNDGSNGVISIQSTGSYEYMAYQAENKLT
ISLKRPQDNVRLNSKNNQNYTGKKISLDFQDIEVRRVLQLLADFTNINMVTADSVQGNITLHLKDVPWDQALDIILKTKN
LDKRRNGNVIWIAPVSELIKSEEDEAKAIAQSTKLAPLQTEYILLKYAKAADIEKLITQGRNSGTSNSNTNGSATVEPLG
DSVGTLLSPRGTISLDPRTNTLIINDTSQKIDQIRKMIDLLDIPVKQVMIEARIVRATTSFSKEMGVKWGILSQGINQNS
NLLVGGSETTLWNLRNPDSNGTYTIERPDNLNVDLGVTTTGASSIAFGLISLSDFMLDLELSALQADGYGEVISTPKVMS
ADKQKAKVATGVEVPYQSTTNSAAGSTATTSFKEALLSLEVTPNITPDGKILMELNIANDSINSYAQNGEAILNKNTINT
NVLVNNGETVVLGGVFEQTTNNAVTKVPFLGDLPYVGRLFKKTAKSEAKNELLIFVTPRIVNDTIVGNH

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=731690 N5P16_RS03475 WP_004923730.1 766514..768643(+) (comQ) [Acinetobacter baylyi strain JAT2044]
ATGAAACAGATCATACGTCAATTTTCGATCGGGACAGTTGCTTATGCCATCATGCAGGTTGCAAGTGCTCAGGTTGCAAT
CACTAACGTGGTTCCAATGAATATTCCAGGACAAGGCACAGAAATTCGGGTCATGTTTAATGGATTGCCGCCTCAGCCTC
AAGCCTATCAACTTGAGCAGCCAGCGCGTCTGATTCTGGATTTTGATAAAGCAGGTCAGAAGCTTGCAAAAAGCTTGATT
CCTGTGACCACTAATGAAGCTAGCTCAATTGATGTTAGTTCGGATGATAAACGCGCCAGAGTTGTGGTTAATCTAAAAGA
TGCTGGCGCATTCACCACACGCGTTGAAGGCAATGTTTTCATTCTTAAAATTAACAATATTCAATCGACTGCAACGCCTG
TTGCAACGTCAGCACCTGCGCCTCAGCAGGGCATTGGTAATATCGGTTTTCAGCGTGGTGCTCAAGGTGAAGGGCTGGTT
GTTATTGATTTGCAAGGAACAAATACGCCTGTTGATGTGCAGCAACAAGGCAGCAAAGTGGTGGTGCGTTTCCCAGGAAT
CAAAATACCCACACATTTAGCTCGTCGTCTAAATACAACTGATTTTGCAACACCTGTTGCTTCAATAGATTCCTATAATG
ATGGCAGTAATGGGGTTATTTCCATTCAGTCTACGGGTAGCTACGAATATATGGCCTATCAGGCTGAAAATAAGCTCACC
ATTAGTTTAAAACGTCCGCAGGATAATGTACGCCTCAATTCCAAAAACAATCAGAATTATACAGGGAAAAAGATTTCTCT
AGATTTTCAGGATATTGAAGTGCGCCGTGTACTACAGCTACTTGCAGACTTCACCAATATTAATATGGTCACTGCCGATT
CTGTACAGGGTAATATTACGTTGCATCTTAAAGATGTACCTTGGGATCAGGCACTGGATATTATTTTAAAAACAAAAAAT
CTGGATAAACGCCGTAATGGGAATGTGATCTGGATTGCGCCTGTTTCAGAGTTGATTAAATCTGAAGAAGATGAAGCGAA
GGCAATTGCGCAAAGTACCAAGCTTGCACCGCTACAAACTGAATATATTTTATTGAAATATGCTAAAGCTGCAGATATTG
AAAAGTTAATTACCCAAGGGCGTAATAGTGGTACATCCAATAGCAATACGAATGGCAGTGCGACTGTTGAACCTTTAGGC
GATAGTGTTGGAACTTTGCTGAGTCCAAGAGGAACCATTTCCCTTGATCCGCGAACCAATACCTTAATTATTAATGATAC
CTCACAAAAAATTGACCAGATTCGTAAGATGATTGACTTACTGGATATTCCAGTCAAGCAGGTGATGATTGAAGCACGGA
TCGTACGTGCGACGACATCTTTTAGTAAAGAAATGGGTGTGAAATGGGGGATTTTATCTCAAGGTATCAATCAAAATAGC
AATCTGTTAGTGGGCGGGAGTGAAACAACGCTTTGGAACTTGCGTAACCCTGATAGTAACGGGACGTATACGATAGAACG
TCCAGACAATCTGAATGTGGATCTTGGTGTGACCACCACAGGTGCAAGCAGTATTGCCTTTGGTTTGATTAGTCTTTCTG
ATTTTATGCTGGATTTAGAACTTTCTGCGTTGCAGGCAGATGGATATGGTGAAGTCATTTCGACACCTAAAGTCATGTCG
GCAGATAAGCAAAAGGCTAAAGTTGCAACCGGTGTTGAAGTTCCGTATCAATCAACAACCAATTCGGCTGCTGGTTCAAC
GGCGACAACATCATTTAAAGAAGCATTACTCAGCCTTGAAGTAACACCTAATATTACCCCAGACGGCAAAATCTTGATGG
AACTCAACATTGCCAACGACTCAATTAACAGTTATGCCCAAAATGGCGAAGCGATTTTAAATAAAAATACCATTAACACC
AATGTGCTGGTGAATAATGGCGAAACTGTAGTATTGGGTGGCGTATTTGAGCAAACAACCAACAATGCCGTGACTAAAGT
ACCATTTTTAGGTGATCTTCCTTACGTTGGACGCCTATTTAAGAAGACGGCCAAAAGTGAGGCAAAAAATGAGCTGCTAA
TTTTTGTGACGCCTCGAATAGTTAATGACACTATTGTTGGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(291-334)

Bacterial type II/III secretion system short domain (Secretin_N)

(362-447)

Bacterial type II and III secretion system protein (Secretin)

(543-701)

AMIN domain (AMIN)

(40-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Acinetobacter baylyi ADP1

100

100

1
  pilQ Acinetobacter baumannii D1279779

75.241

100

0.772
  pilQ Acinetobacter baumannii strain A118

75.103

100

0.77
  pilQ Pseudomonas aeruginosa PAK

40.883

99.013

0.405
  pilQ Legionella pneumophila strain ERS1305867

38.719

96.897

0.375
  pilQ Legionella pneumophila strain Lp02

38.428

96.897

0.372