Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GZN30_RS13160 Genome accession   NZ_AP019657
Coordinates   2915398..2916513 (+) Length   371 a.a.
NCBI ID   WP_075648191.1    Uniprot ID   -
Organism   Vibrio ponticus strain DSM 16217     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2910398..2921513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZN30_RS13140 rsmB 2911854..2913134 (-) 1281 WP_075648187.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  GZN30_RS13145 fmt 2913253..2914200 (-) 948 WP_075648188.1 methionyl-tRNA formyltransferase -
  GZN30_RS13150 def 2914233..2914745 (-) 513 WP_075648189.1 peptide deformylase -
  GZN30_RS13155 - 2914917..2915405 (+) 489 WP_075648190.1 hypothetical protein -
  GZN30_RS13160 dprA 2915398..2916513 (+) 1116 WP_075648191.1 DNA-processing protein DprA Machinery gene
  GZN30_RS13165 - 2916516..2916992 (+) 477 WP_075648192.1 DUF494 family protein -
  GZN30_RS13170 - 2917017..2917601 (+) 585 WP_075648193.1 type I DNA topoisomerase -
  GZN30_RS13175 - 2917685..2918818 (-) 1134 WP_075648194.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  GZN30_RS13180 purE 2918822..2919307 (-) 486 WP_075648195.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  GZN30_RS13185 - 2919612..2920169 (+) 558 WP_075648196.1 L-threonylcarbamoyladenylate synthase -
  GZN30_RS13190 hemF 2920187..2921107 (+) 921 WP_075648197.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40123.17 Da        Isoelectric Point: 6.9296

>NTDB_id=73132 GZN30_RS13160 WP_075648191.1 2915398..2916513(+) (dprA) [Vibrio ponticus strain DSM 16217]
MTEQALRAWLTLYFTPRLGGKGLQKLLAKASPNELLGWDGAQLQAAGLSNAQVAFIQQASHDYIEQCLRWRDEAPHHHII
TLDDPRYPPLLAQVPVPPPLLFVKGELASLSLPQIAIVGSRHATIDGLQSAKNFARAMADQGLIVTSGLALGVDGHAHDG
ALQGGGKTVAVLGCGLNTIYPARHKQLAMRIEQQGALVSEFHPNILPKGANFPRRNRIISGLSLGVLVVEATERSGSLIT
ARYAAEQGRDVFALPGSIHTPQAKGCNQLIKQGAALIQTVDDIVNEIEHLLLWSNNYQARLDVDDVIEKEAKEQLPFADL
LANVGKEVTPVDILAQRTNIPVQEVMMQLLELELLGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=73132 GZN30_RS13160 WP_075648191.1 2915398..2916513(+) (dprA) [Vibrio ponticus strain DSM 16217]
GTGACTGAACAAGCATTGCGAGCTTGGTTAACGCTCTATTTCACGCCAAGATTAGGGGGAAAAGGGCTACAAAAATTGCT
CGCCAAAGCGAGCCCCAATGAACTGCTTGGTTGGGATGGCGCACAACTGCAAGCGGCAGGGCTCTCTAACGCGCAAGTCG
CTTTTATTCAGCAAGCCAGTCATGACTATATTGAGCAGTGCTTACGTTGGCGAGATGAAGCACCTCATCACCATATCATT
ACTCTTGATGACCCACGTTATCCACCGTTATTAGCGCAGGTGCCTGTGCCGCCGCCACTGTTGTTTGTTAAAGGTGAACT
TGCCAGCTTGAGTTTGCCGCAAATCGCGATCGTCGGCAGTCGCCACGCCACGATTGATGGTTTGCAGAGCGCTAAGAATT
TTGCGCGTGCCATGGCGGATCAGGGTTTGATAGTAACTAGCGGTTTAGCGCTGGGTGTCGATGGTCATGCTCACGATGGT
GCGCTGCAAGGCGGTGGTAAAACTGTGGCGGTATTAGGTTGTGGGCTCAACACCATCTATCCGGCGCGGCATAAACAATT
AGCAATGCGAATTGAGCAACAAGGTGCGTTGGTTTCGGAGTTTCATCCCAACATCTTGCCCAAAGGCGCCAATTTTCCCC
GTCGCAATCGTATTATCAGCGGTTTGTCACTGGGGGTGTTGGTGGTGGAAGCAACCGAGCGAAGCGGTTCTTTAATCACT
GCTCGTTATGCCGCTGAGCAAGGGCGTGACGTGTTTGCTTTGCCTGGCTCGATACATACACCCCAAGCCAAGGGTTGCAA
TCAGTTGATCAAGCAAGGAGCAGCGTTAATCCAAACCGTTGATGACATCGTAAATGAAATAGAGCACCTGCTACTGTGGT
CTAATAATTATCAGGCTAGATTAGACGTTGATGACGTGATTGAAAAAGAAGCGAAAGAACAATTGCCATTTGCCGATCTT
CTAGCTAACGTAGGCAAAGAAGTAACACCAGTTGATATTCTGGCACAAAGGACCAATATTCCTGTGCAAGAAGTCATGAT
GCAGCTGTTAGAGCTCGAGCTCTTAGGGCATGTTGTTGCGGTTTCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-364)

DNA recombination-mediator protein A (DNA_processg_A)

(76-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

61.202

98.652

0.604
  dprA Vibrio cholerae strain A1552

56.604

100

0.566
  dprA Glaesserella parasuis strain SC1401

45.283

100

0.453
  dprA Legionella pneumophila strain ERS1305867

44.11

98.383

0.434
  dprA Neisseria gonorrhoeae strain FA1090

38.287

100

0.41
  dprA Neisseria gonorrhoeae MS11

38.035

100

0.407
  dprA Haemophilus influenzae Rd KW20

48.658

80.323

0.391

Multiple sequence alignment