Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   N5O87_RS10880 Genome accession   NZ_CP104582
Coordinates   2252246..2252566 (+) Length   106 a.a.
NCBI ID   WP_279533074.1    Uniprot ID   -
Organism   Pseudomonas sp. GD03919     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2251202..2251907 2252246..2252566 flank 339


Gene organization within MGE regions


Location: 2251202..2252566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5O87_RS10875 (N5O87_10880) - 2251202..2251907 (-) 706 Protein_2140 IS5 family transposase -
  N5O87_RS10880 (N5O87_10885) comE1/comEA 2252246..2252566 (+) 321 WP_279533074.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11050.36 Da        Isoelectric Point: 4.4000

>NTDB_id=730709 N5O87_RS10880 WP_279533074.1 2252246..2252566(+) (comE1/comEA) [Pseudomonas sp. GD03919]
MKNYLSSVLFALFASFSFAVSAVDTGNAEAGEATSAQVAQAVTVNLNTADAETLQRELAGIGATKAQAIVAYREAHGSFA
SVDELLEVKGIGEATLNKNRDKLVVD

Nucleotide


Download         Length: 321 bp        

>NTDB_id=730709 N5O87_RS10880 WP_279533074.1 2252246..2252566(+) (comE1/comEA) [Pseudomonas sp. GD03919]
ATGAAAAACTACCTCTCTTCTGTTCTCTTTGCGCTTTTTGCCTCTTTCTCCTTCGCTGTATCCGCAGTCGACACTGGAAA
TGCCGAGGCTGGCGAAGCGACCTCTGCGCAAGTCGCTCAGGCTGTAACCGTCAATCTCAATACTGCAGATGCTGAGACGC
TCCAGCGTGAGCTGGCGGGTATCGGTGCAACCAAAGCTCAGGCAATCGTGGCCTATCGTGAGGCTCATGGCAGTTTTGCT
TCTGTTGACGAACTGCTTGAGGTCAAGGGTATTGGTGAGGCGACTCTGAATAAGAATCGCGACAAACTGGTAGTCGACTG
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(40-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

48.649

100

0.509
  comEA/comE1 Glaesserella parasuis strain SC1401

45.455

100

0.472
  comEA Legionella pneumophila str. Paris

41.748

97.17

0.406
  comEA Legionella pneumophila strain ERS1305867

41.748

97.17

0.406
  comEA Vibrio parahaemolyticus RIMD 2210633

40.777

97.17

0.396
  comEA Vibrio cholerae C6706

40.594

95.283

0.387
  comEA Vibrio cholerae strain A1552

40.594

95.283

0.387
  comEA Streptococcus thermophilus LMD-9

45.977

82.075

0.377