NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	N4Q31_RS16050	Genome accession	NZ_CP104391
Coordinates	3099676..3100272 (+)	Length	198 a.a.
NCBI ID	WP_024427684.1	Uniprot ID	-
Organism	Bacillus safensis strain GX-H6
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3094676..3105272

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N4Q31_RS16025 (N4Q31_16025)	-	3095637..3096806 (-)	1170	WP_260774886.1	macrolide family glycosyltransferase	-
N4Q31_RS16030 (N4Q31_16030)	-	3096975..3097865 (-)	891	WP_260776110.1	ABC transporter substrate-binding protein	-
N4Q31_RS16035 (N4Q31_16035)	-	3098163..3098627 (-)	465	WP_039181615.1	DinB family protein	-
N4Q31_RS16045 (N4Q31_16045)	-	3099139..3099447 (-)	309	WP_039181618.1	TM2 domain-containing protein	-
N4Q31_RS16050 (N4Q31_16050)	clpP	3099676..3100272 (+)	597	WP_024427684.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
N4Q31_RS16055 (N4Q31_16055)	-	3100333..3100911 (-)	579	WP_058837621.1	TIGR00730 family Rossman fold protein	-
N4Q31_RS16060 (N4Q31_16060)	-	3101049..3101390 (+)	342	WP_058837578.1	MazG nucleotide pyrophosphohydrolase domain-containing protein	-
N4Q31_RS16065 (N4Q31_16065)	-	3101417..3103039 (-)	1623	WP_047203861.1	SulP family inorganic anion transporter	-
N4Q31_RS16070 (N4Q31_16070)	-	3103077..3103658 (-)	582	WP_260774888.1	carbonic anhydrase	-
N4Q31_RS16075 (N4Q31_16075)	-	3104211..3105188 (+)	978	WP_251181055.1	D-glycerate dehydrogenase	-

Sequence

Protein

Download Length: 198 a.a. Molecular weight: 21832.00 Da Isoelectric Point: 4.6835

                                >NTDB_id=729452 N4Q31_RS16050 WP_024427684.1 3099676..3100272(+) (clpP) [Bacillus safensis strain GX-H6]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT

MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ

PIEVIERDTDRDNFKTAEEALQYGLIDKVLTRNTEDQK

Nucleotide

Download Length: 597 bp

                                >NTDB_id=729452 N4Q31_RS16050 WP_024427684.1 3099676..3100272(+) (clpP) [Bacillus safensis strain GX-H6]

ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA

CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTGTCACAGCTGCTTTTCTTAGAAGCTG

AAGATCCAGAAAAAGATATTTCTATCTACATTAACAGCCCTGGCGGTTCAATCACAGCTGGTATGGCCATTTACGATACG

ATGCAATTTATTAAACCAAAGGTATCAACTATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG

TGAAAAAGGTAAGCGTTATGCTCTTCCAAACAGTGAAGTCATGATTCACCAACCACTAGGCGGAGCCCAAGGTCAAGCAA

CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG

CCAATTGAAGTCATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTCAATACGGACTCATTGA

CAAAGTCTTGACCCGTAATACAGAAGACCAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	93.939	100	0.939
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	67.539	96.465	0.652
clpP	Streptococcus thermophilus LMG 18311	58.549	97.475	0.571
clpP	Streptococcus thermophilus LMD-9	58.549	97.475	0.571
clpP	Lactococcus lactis subsp. cremoris KW2	56.186	97.98	0.551
clpP	Streptococcus pneumoniae Rx1	55.67	97.98	0.545
clpP	Streptococcus pneumoniae D39	55.67	97.98	0.545
clpP	Streptococcus pneumoniae R6	55.67	97.98	0.545
clpP	Streptococcus pneumoniae TIGR4	55.67	97.98	0.545
clpP	Streptococcus pyogenes JRS4	55.44	97.475	0.54
clpP	Streptococcus pyogenes MGAS315	55.44	97.475	0.54
clpP	Streptococcus mutans UA159	54.639	97.98	0.535
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	54.124	97.98	0.53

Detailed information NTG0729452