Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   N4R43_RS07930 Genome accession   NZ_CP104388
Coordinates   1528029..1528433 (-) Length   134 a.a.
NCBI ID   WP_021722514.1    Uniprot ID   -
Organism   Lactococcus lactis strain LJL7m20     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1523029..1533433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4R43_RS07900 (N4R43_07905) - 1523186..1524718 (+) 1533 WP_058223062.1 Nramp family divalent metal transporter -
  N4R43_RS07905 (N4R43_07910) - 1524820..1525788 (+) 969 WP_003130649.1 PhoH family protein -
  N4R43_RS07910 (N4R43_07915) - 1525846..1526325 (+) 480 WP_058223061.1 NUDIX hydrolase -
  N4R43_RS07915 (N4R43_07920) ybeY 1526477..1526965 (+) 489 WP_003130652.1 rRNA maturation RNase YbeY -
  N4R43_RS07920 (N4R43_07925) - 1526949..1527404 (+) 456 WP_003130653.1 diacylglycerol kinase family protein -
  N4R43_RS07925 (N4R43_07930) - 1527418..1527996 (+) 579 WP_023189343.1 nucleotidyltransferase family protein -
  N4R43_RS07930 (N4R43_07935) comFC 1528029..1528433 (-) 405 WP_021722514.1 ComF family protein Machinery gene
  N4R43_RS07935 (N4R43_07940) comFA 1528676..1529998 (-) 1323 WP_058223060.1 DEAD/DEAH box helicase Machinery gene
  N4R43_RS07940 (N4R43_07945) - 1530055..1530684 (+) 630 WP_003130660.1 YigZ family protein -
  N4R43_RS07945 (N4R43_07950) - 1530818..1531315 (+) 498 WP_023189340.1 VanZ family protein -
  N4R43_RS07950 (N4R43_07955) - 1531363..1532382 (+) 1020 WP_012897709.1 DUF475 domain-containing protein -
  N4R43_RS07955 (N4R43_07960) - 1532497..1533243 (+) 747 WP_058223057.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15677.11 Da        Isoelectric Point: 9.8798

>NTDB_id=729336 N4R43_RS07930 WP_021722514.1 1528029..1528433(-) (comFC) [Lactococcus lactis strain LJL7m20]
MKDYFSQYKFVGDYRLYQIFEPYFKSISPKSPLVPIPISPKRLEERGFNQVTAFLQQDNFIELLEKENSVKQSSLNRKER
LESPNPFRLKKGLKVPTKVILIDDIYTTGTTLYHASQILKEAGVHEIRSFSLCR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=729336 N4R43_RS07930 WP_021722514.1 1528029..1528433(-) (comFC) [Lactococcus lactis strain LJL7m20]
ATGAAAGATTATTTTAGCCAGTATAAATTTGTTGGAGATTATCGATTATACCAAATTTTTGAGCCCTATTTTAAAAGTAT
TTCCCCAAAATCTCCTTTGGTTCCAATTCCTATTTCACCAAAAAGATTAGAGGAACGTGGTTTCAATCAAGTGACTGCTT
TTCTTCAACAAGATAATTTTATTGAACTTCTTGAAAAAGAGAATTCGGTCAAACAATCTAGCCTTAATCGAAAAGAACGA
TTGGAAAGTCCAAATCCTTTTCGATTAAAAAAAGGGCTAAAAGTCCCTACAAAAGTTATATTAATTGACGATATTTATAC
AACAGGTACCACCTTATATCACGCATCACAAATTCTAAAAGAAGCTGGTGTTCATGAAATAAGGAGCTTTTCTCTCTGCC
GTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(91-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

67.164

100

0.672
  comFC/cflB Streptococcus mitis NCTC 12261

46.043

100

0.478
  comFC/cflB Streptococcus mitis SK321

46.043

100

0.478
  comFC/cflB Streptococcus pneumoniae TIGR4

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae D39

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae R6

43.885

100

0.455
  comFC Bacillus subtilis subsp. subtilis str. 168

38.889

100

0.418
  comFC Latilactobacillus sakei subsp. sakei 23K

39.37

94.776

0.373