Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K7563_RS16045 Genome accession   NZ_CP104289
Coordinates   3480054..3481313 (+) Length   419 a.a.
NCBI ID   WP_227837946.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain ACYCd.9D     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3480054..3489823 3480054..3481313 within 0


Gene organization within MGE regions


Location: 3480054..3489823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7563_RS16045 (K7563_16045) pilC 3480054..3481313 (+) 1260 WP_227837946.1 type II secretion system F family protein Machinery gene
  K7563_RS16050 (K7563_16050) - 3481322..3482185 (+) 864 WP_005418626.1 A24 family peptidase -
  K7563_RS16055 (K7563_16055) coaE 3482197..3482808 (+) 612 WP_227837944.1 dephospho-CoA kinase -
  K7563_RS16060 (K7563_16060) - 3482982..3483368 (-) 387 WP_065196692.1 hypothetical protein -
  K7563_RS16065 (K7563_16065) - 3483904..3485274 (-) 1371 WP_069139309.1 HAMP domain-containing sensor histidine kinase -
  K7563_RS16070 (K7563_16070) - 3485237..3485914 (-) 678 WP_005410804.1 response regulator transcription factor -
  K7563_RS16075 (K7563_16075) - 3486076..3486537 (-) 462 WP_065185267.1 hypothetical protein -
  K7563_RS16080 (K7563_16080) - 3486653..3487123 (-) 471 WP_072167638.1 hypothetical protein -
  K7563_RS16085 (K7563_16085) - 3487218..3487697 (-) 480 WP_151354682.1 hypothetical protein -
  K7563_RS16090 (K7563_16090) rimK 3487956..3488834 (-) 879 WP_057494737.1 30S ribosomal protein S6--L-glutamate ligase -
  K7563_RS16095 (K7563_16095) - 3488932..3489174 (-) 243 WP_061479300.1 hypothetical protein -
  K7563_RS16100 (K7563_16100) - 3489320..3489823 (+) 504 WP_227837942.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45796.19 Da        Isoelectric Point: 10.1177

>NTDB_id=728317 K7563_RS16045 WP_227837946.1 3480054..3481313(+) (pilC) [Stenotrophomonas maltophilia strain ACYCd.9D]
MSVSRSAIKKEPVARSTTELQPFVWEGIDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKPKPLFGAAGSRITPKD
IAFFSRQMATMMKSGVPIVSALDIIGSGHKNARMKKMVEGIRADIEGGSSLYESVSRHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPAMVVVVALLVSAIMLIFVVPQFEEVFKGFGAELPAFTQLIVNLSRFMVSWWWL
IAIVLVGAVAGFVMSYKRSLKMQHTLDRFVLKIPIIGQIMNDSAVARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQTALFPHMVIQMTGIGEEAGALDSMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGVVV
GSMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=728317 K7563_RS16045 WP_227837946.1 3480054..3481313(+) (pilC) [Stenotrophomonas maltophilia strain ACYCd.9D]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCCGTGGCGCGCAGCACCACGGAGCTGCAGCCGTTTGTCTGGGAGGG
GATCGACAAGCGGGGCGTGAAGATGAAGGGAGAGCAGTTGGCAAAGAACGCCAACTTACTCCGCGCCGAACTTCGCCGCC
AAGGGATCAATCCTGGTCAAGTCAAACCGAAACCCAAACCTCTCTTTGGGGCAGCTGGAAGCCGGATCACGCCGAAAGAC
ATCGCGTTCTTCAGCCGTCAGATGGCAACGATGATGAAATCTGGCGTACCGATCGTGTCGGCGTTGGACATCATCGGTAG
TGGGCACAAGAATGCCCGCATGAAGAAGATGGTAGAAGGGATCCGAGCCGACATCGAGGGTGGCTCATCCCTCTACGAGT
CCGTCAGCAGGCATCCGGTGCAGTTTGATGAGCTGTATCGAAATCTCGTGCGTGCAGGCGAAGGAGCCGGCGTGCTCGAG
ACTGTCCTGGACACTGTGGCAACTTACAAAGAGAACATCGAAGCCCTCAAAGGCAAGATCAAGAAGGCCTTGTTCTACCC
TGCTATGGTGGTCGTGGTCGCGCTGCTGGTCAGTGCAATTATGTTGATTTTCGTGGTACCGCAGTTTGAAGAGGTCTTCA
AGGGATTCGGAGCTGAGCTACCGGCTTTCACTCAGCTGATCGTGAACCTCTCGCGATTCATGGTGTCTTGGTGGTGGTTG
ATAGCCATTGTTCTGGTGGGGGCGGTTGCTGGGTTTGTGATGAGCTACAAGCGCTCACTTAAAATGCAGCACACGCTTGA
TCGATTTGTACTCAAGATCCCCATCATCGGCCAGATCATGAACGACAGTGCCGTCGCGCGGTTCGCGAGAACAACTGCCG
TAACGTTCAAGGCCGGTGTACCGCTCGTGGAGGCGCTCGGGATCGTCGCGGGCGCAACGGGCAACAAAGTCTACGAGGAA
GCCGTTCTGCGCATGCGTGACGACGTGTCGGTAGGCTACCCCGTCAACATGGCTATGAAGCAGACCGCACTGTTCCCCCA
CATGGTGATCCAGATGACTGGCATCGGTGAGGAAGCCGGCGCACTGGATTCCATGTTGTTCAAAGTCGCCGAGTATTATG
AACAGGAAGTCAACAATGCCGTGGATGCCCTGAGCAGCCTGCTCGAACCGATGATCATGGTCTTCATCGGCGTCGTCGTA
GGCAGTATGGTCATCGGCATGTACCTTCCCATCTTCAAACTTGGCGCCGTCGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.465

96.42

0.516
  pilC Pseudomonas stutzeri DSM 10701

53.283

94.511

0.504
  pilC Acinetobacter baylyi ADP1

49.015

96.897

0.475
  pilC Acinetobacter baumannii D1279779

49.118

94.749

0.465
  pilG Neisseria gonorrhoeae MS11

44.584

94.749

0.422
  pilG Neisseria meningitidis 44/76-A

43.97

94.988

0.418
  pilC Vibrio cholerae strain A1552

42.365

96.897

0.411
  pilC Vibrio campbellii strain DS40M4

42.04

95.943

0.403