Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   N2A96_RS05685 Genome accession   NZ_CP104047
Coordinates   1099900..1100574 (-) Length   224 a.a.
NCBI ID   WP_003106958.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP10     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1094900..1105574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A96_RS05660 (N2A96_05660) - 1095177..1096454 (-) 1278 WP_003102832.1 pyrimidine-nucleoside phosphorylase -
  N2A96_RS05665 (N2A96_05665) - 1096441..1097040 (-) 600 WP_003106951.1 class I SAM-dependent methyltransferase -
  N2A96_RS05670 (N2A96_05670) coaA 1097291..1098211 (+) 921 WP_003106953.1 type I pantothenate kinase -
  N2A96_RS05675 (N2A96_05675) rpsT 1098280..1098513 (+) 234 WP_003105398.1 30S ribosomal protein S20 -
  N2A96_RS05680 (N2A96_05680) ciaH 1098603..1099907 (-) 1305 WP_003106956.1 cell wall metabolism sensor histidine kinase WalK Regulator
  N2A96_RS05685 (N2A96_05685) ciaR 1099900..1100574 (-) 675 WP_003106958.1 response regulator transcription factor Regulator
  N2A96_RS05690 (N2A96_05690) - 1100692..1103229 (-) 2538 WP_003106959.1 M1 family metallopeptidase -
  N2A96_RS05695 (N2A96_05695) phoU 1103293..1103946 (-) 654 WP_003103398.1 phosphate signaling complex protein PhoU -
  N2A96_RS05700 (N2A96_05700) pstB 1104012..1104770 (-) 759 WP_003104047.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25779.73 Da        Isoelectric Point: 4.3994

>NTDB_id=727307 N2A96_RS05685 WP_003106958.1 1099900..1100574(-) (ciaR) [Streptococcus parauberis strain KSP10]
MIKILLVEDDLSLSNSIFDFLDDFADVLQVFDGDEGLYEAESGVYDLILLDLMLPEKDGFQVLKELREKDIHTAVLIMTA
KESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKLMDSSLYYKNLKVDTERNVVIVDEKEVELLGKEFELLVY
FLQNQNVILPKSQIFDRIWGFDSDTTISVVEVYVSKIRKKLKGTKFVADLQTLRSVGYILKTNE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=727307 N2A96_RS05685 WP_003106958.1 1099900..1100574(-) (ciaR) [Streptococcus parauberis strain KSP10]
ATGATAAAAATATTATTAGTCGAAGATGATTTGAGTTTGTCCAATTCAATATTTGATTTTTTAGATGACTTTGCTGATGT
CTTACAAGTTTTTGATGGTGATGAGGGGCTTTATGAGGCTGAAAGTGGTGTCTATGACTTAATTTTGCTTGATTTAATGC
TTCCAGAAAAAGATGGTTTTCAAGTTTTAAAAGAGCTTAGGGAAAAAGATATTCATACAGCTGTTTTAATTATGACCGCT
AAAGAGAGTCTTGATGATAAAGGTCATGGTTTTGAATTAGGAGCTGATGATTATTTAACTAAGCCGTTTTATCTTGAAGA
ATTGAAGATGCGCATTCAAGCATTACTCAAACGTTCTGGAAAACTGATGGACAGTAGTCTATATTATAAAAATCTAAAAG
TTGATACAGAACGTAATGTCGTTATTGTTGATGAGAAGGAAGTGGAATTACTTGGAAAAGAGTTTGAATTACTTGTTTAT
TTCCTTCAAAATCAAAACGTTATTTTGCCAAAATCACAGATATTTGATCGAATTTGGGGATTTGATAGTGATACAACAAT
TTCAGTCGTAGAAGTTTATGTTTCAAAAATACGAAAAAAATTGAAGGGAACAAAATTTGTTGCTGATTTACAAACTCTTC
GGAGCGTTGGCTACATTTTAAAAACAAATGAATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-220)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

86.425

98.661

0.853
  ciaR Streptococcus pneumoniae Rx1

83.71

98.661

0.826
  ciaR Streptococcus pneumoniae D39

83.71

98.661

0.826
  ciaR Streptococcus pneumoniae R6

83.71

98.661

0.826
  ciaR Streptococcus pneumoniae TIGR4

83.71

98.661

0.826
  vicR Streptococcus mutans UA159

35.745

100

0.375
  micA Streptococcus pneumoniae Cp1015

35.47

100

0.371
  covR Lactococcus lactis subsp. lactis strain DGCC12653

36.444

100

0.366