Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NY025_RS11170 Genome accession   NZ_CP103852
Coordinates   726588..727853 (-) Length   421 a.a.
NCBI ID   WP_193035781.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain LMG 9673     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 721588..732853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY025_RS11140 (NY025_11140) - 722659..723543 (+) 885 WP_193027551.1 ATP-binding protein -
  NY025_RS11145 (NY025_11145) - 723521..723982 (+) 462 WP_193027552.1 NUDIX domain-containing protein -
  NY025_RS11150 (NY025_11150) yacG 723975..724190 (-) 216 WP_011002736.1 DNA gyrase inhibitor YacG -
  NY025_RS11155 (NY025_11155) zapD 724201..724959 (-) 759 WP_020747465.1 cell division protein ZapD -
  NY025_RS11160 (NY025_11160) coaE 725077..725691 (-) 615 WP_193027553.1 dephospho-CoA kinase -
  NY025_RS11165 (NY025_11165) - 725704..726585 (-) 882 WP_280926351.1 A24 family peptidase -
  NY025_RS11170 (NY025_11170) pilC 726588..727853 (-) 1266 WP_193035781.1 type II secretion system F family protein Machinery gene
  NY025_RS11175 (NY025_11175) pilB 727898..729625 (-) 1728 WP_193027556.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NY025_RS11180 (NY025_11180) - 729873..731150 (-) 1278 WP_193027557.1 HlyC/CorC family transporter -
  NY025_RS11190 (NY025_11190) ispB 731438..732406 (-) 969 WP_193028424.1 octaprenyl diphosphate synthase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46433.70 Da        Isoelectric Point: 10.3150

>NTDB_id=726008 NY025_RS11170 WP_193035781.1 726588..727853(-) (pilC) [Ralstonia pseudosolanacearum strain LMG 9673]
MATRAPTANRSAAASASKTAAKKAPTQYIFEWEGKDRKGKIFKGEMRAESITEVNAVLRKQGLSITKSKRRRAARGKKIV
PKDIAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDIESGSSMAQAFRRHPKYFDSLYCNLIDAGEQGG
ILDALLERLSMYMEKSIALKAQIKSAMIYPISVLSVAFLVTVVLMIFVVPAFKNVFASFGATLPAPTLVVMGISDFFVKW
WYIIIFAPVIGIILYARAFKRSENVQRNTHKAILKMPIFGSIIRKATIARWTRTLATMFSAGTPLVESMESVAGAAGNWV
YYDATMEIQQAVRIGTSLTNAMQATHVFDNMVLQMTQIGEESGALDNMLLKVAEFYEREVDDAVANISALIEPLIIVILG
VLIGGMVVAMYLPIFKLGQVV

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=726008 NY025_RS11170 WP_193035781.1 726588..727853(-) (pilC) [Ralstonia pseudosolanacearum strain LMG 9673]
ATGGCCACACGAGCACCGACCGCGAACCGGTCCGCCGCTGCATCGGCAAGCAAGACCGCCGCCAAGAAAGCGCCCACGCA
GTACATCTTCGAATGGGAAGGCAAGGACCGCAAAGGCAAGATCTTCAAGGGCGAGATGCGGGCGGAGAGCATCACCGAAG
TCAATGCGGTGCTGCGCAAGCAAGGGCTGTCGATCACCAAGTCCAAGCGTCGGCGCGCCGCGCGCGGCAAGAAGATCGTA
CCCAAGGACATCGCCTACTTCACGCGCCAGCTGTCTACCATGCTGAAAGCGGGCGTGCCGCTGCTGCAATCGGTCGACAT
CATCGCGCGCGGGCACGCCAACCCGAACTTCACCCAGCTGCTGACGGAAATCCGTGTCGACATCGAGTCTGGCAGCAGCA
TGGCGCAGGCCTTCCGCCGCCATCCGAAGTACTTCGATTCGCTGTACTGCAACCTGATCGATGCGGGTGAGCAGGGCGGT
ATTCTCGACGCGCTGCTCGAGCGGCTGTCGATGTACATGGAAAAGTCGATCGCGCTGAAGGCGCAGATCAAGTCGGCCAT
GATCTATCCGATCTCGGTGCTGAGTGTGGCTTTCCTGGTCACGGTGGTGCTGATGATCTTCGTGGTGCCGGCGTTCAAGA
ACGTGTTCGCCAGCTTCGGCGCCACGCTGCCAGCCCCGACGCTGGTGGTGATGGGCATCTCGGACTTCTTCGTGAAGTGG
TGGTACATCATCATCTTCGCGCCCGTCATCGGCATCATTCTGTATGCGCGCGCCTTCAAGCGCTCGGAGAATGTGCAGCG
CAACACGCACAAGGCCATCCTGAAGATGCCGATCTTCGGCAGCATCATCCGCAAGGCCACCATCGCGCGCTGGACGCGGA
CGCTGGCCACCATGTTCTCGGCCGGGACGCCGCTGGTGGAGTCGATGGAATCCGTGGCGGGCGCCGCCGGCAACTGGGTC
TACTATGACGCCACCATGGAGATCCAGCAGGCGGTGCGCATCGGTACCAGCCTCACCAACGCCATGCAGGCGACCCATGT
GTTCGACAACATGGTGCTGCAGATGACGCAGATCGGCGAGGAATCCGGTGCGCTGGACAACATGCTGCTGAAGGTGGCCG
AATTCTACGAGCGCGAGGTCGATGACGCGGTGGCCAACATCTCCGCCCTGATCGAGCCGCTCATCATCGTGATCCTGGGC
GTGCTGATCGGGGGCATGGTGGTTGCCATGTACCTGCCGATCTTCAAGCTGGGCCAAGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(87-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

50.248

95.962

0.482
  pilG Neisseria gonorrhoeae MS11

50.627

94.774

0.48
  pilG Neisseria meningitidis 44/76-A

50.376

94.774

0.477
  pilC Acinetobacter baumannii D1279779

47.666

96.675

0.461
  pilC Acinetobacter baylyi ADP1

46.929

96.675

0.454
  pilC Legionella pneumophila strain ERS1305867

45.813

96.437

0.442
  pilC Vibrio cholerae strain A1552

39.75

95.012

0.378
  pilC Vibrio campbellii strain DS40M4

39.552

95.487

0.378