Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NYR68_RS05170 Genome accession   NZ_CP103814
Coordinates   1124447..1124884 (-) Length   145 a.a.
NCBI ID   WP_279622774.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 4091     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1119447..1129884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR68_RS05145 (NYR68_05150) yacG 1120351..1120539 (-) 189 WP_005623139.1 DNA gyrase inhibitor YacG -
  NYR68_RS05150 (NYR68_05155) coaE 1120521..1121159 (-) 639 WP_279441162.1 dephospho-CoA kinase -
  NYR68_RS05155 (NYR68_05160) - 1121181..1121855 (-) 675 WP_039197142.1 fimbrial protein -
  NYR68_RS05160 (NYR68_05165) pilC 1121855..1123048 (-) 1194 WP_279454529.1 type II secretion system F family protein Machinery gene
  NYR68_RS05165 (NYR68_05170) pilB 1123041..1124426 (-) 1386 WP_279437884.1 GspE/PulE family protein Machinery gene
  NYR68_RS05170 (NYR68_05175) pilA 1124447..1124884 (-) 438 WP_279622774.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR68_RS05175 (NYR68_05180) radA 1125065..1126444 (+) 1380 WP_279443725.1 DNA repair protein RadA Machinery gene
  NYR68_RS05180 (NYR68_05185) pepB 1126510..1127796 (+) 1287 WP_279622822.1 aminopeptidase PepB -
  NYR68_RS05185 (NYR68_05190) - 1127924..1128859 (+) 936 WP_278225782.1 KpsF/GutQ family sugar-phosphate isomerase -
  NYR68_RS05190 (NYR68_05195) greB 1128869..1129357 (+) 489 WP_005611555.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15415.70 Da        Isoelectric Point: 8.0828

>NTDB_id=725360 NYR68_RS05170 WP_279622774.1 1124447..1124884(-) (pilA) [Actinobacillus equuli subsp. haemolyticus strain 4091]
MKFVFKPIQQAFTLIELMIVIAIIAILATVAIPSYNNYTKKAALSELLATSSAYKTDVEICIYNTGDTKGCSNGTNGIKN
GDDLKNSKYLGTVSVVAGAITVNGKGSVAGYGYTLTPDYANKTLTWKTTCSGEDKSLFPAAFCSE

Nucleotide


Download         Length: 438 bp        

>NTDB_id=725360 NYR68_RS05170 WP_279622774.1 1124447..1124884(-) (pilA) [Actinobacillus equuli subsp. haemolyticus strain 4091]
ATGAAATTCGTATTCAAGCCTATACAGCAGGCATTTACCCTGATTGAATTAATGATTGTAATTGCAATCATTGCTATTTT
GGCAACGGTAGCCATTCCTTCTTATAACAATTACACCAAAAAGGCGGCATTATCCGAACTGTTAGCGACATCTTCCGCTT
ATAAAACAGATGTGGAAATTTGTATTTATAACACTGGAGATACCAAAGGCTGTTCTAATGGAACAAATGGTATTAAGAAT
GGTGATGATCTTAAAAATTCTAAGTATTTGGGGACTGTCTCTGTAGTTGCTGGCGCTATAACTGTGAATGGCAAGGGCAG
TGTAGCGGGATATGGCTATACGCTTACACCTGATTATGCAAATAAAACACTGACATGGAAAACGACCTGTTCAGGTGAGG
ATAAAAGTTTGTTCCCCGCAGCATTTTGCTCGGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Glaesserella parasuis strain SC1401

61.379

100

0.614
  pilA Haemophilus influenzae Rd KW20

55.319

97.241

0.538
  pilA Haemophilus influenzae 86-028NP

55.714

96.552

0.538
  comP Acinetobacter baylyi ADP1

41.844

97.241

0.407