Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NYR68_RS05175 Genome accession   NZ_CP103814
Coordinates   1125065..1126444 (+) Length   459 a.a.
NCBI ID   WP_279443725.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 4091     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1120065..1131444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR68_RS05145 (NYR68_05150) yacG 1120351..1120539 (-) 189 WP_005623139.1 DNA gyrase inhibitor YacG -
  NYR68_RS05150 (NYR68_05155) coaE 1120521..1121159 (-) 639 WP_279441162.1 dephospho-CoA kinase -
  NYR68_RS05155 (NYR68_05160) - 1121181..1121855 (-) 675 WP_039197142.1 fimbrial protein -
  NYR68_RS05160 (NYR68_05165) pilC 1121855..1123048 (-) 1194 WP_279454529.1 type II secretion system F family protein Machinery gene
  NYR68_RS05165 (NYR68_05170) pilB 1123041..1124426 (-) 1386 WP_279437884.1 GspE/PulE family protein Machinery gene
  NYR68_RS05170 (NYR68_05175) pilA 1124447..1124884 (-) 438 WP_279622774.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR68_RS05175 (NYR68_05180) radA 1125065..1126444 (+) 1380 WP_279443725.1 DNA repair protein RadA Machinery gene
  NYR68_RS05180 (NYR68_05185) pepB 1126510..1127796 (+) 1287 WP_279622822.1 aminopeptidase PepB -
  NYR68_RS05185 (NYR68_05190) - 1127924..1128859 (+) 936 WP_278225782.1 KpsF/GutQ family sugar-phosphate isomerase -
  NYR68_RS05190 (NYR68_05195) greB 1128869..1129357 (+) 489 WP_005611555.1 transcription elongation factor GreB -
  NYR68_RS05195 (NYR68_05200) ribE 1129447..1129908 (-) 462 WP_005600491.1 6,7-dimethyl-8-ribityllumazine synthase -
  NYR68_RS05200 (NYR68_05205) - 1130019..1131224 (-) 1206 WP_279456506.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49712.40 Da        Isoelectric Point: 7.9500

>NTDB_id=725361 NYR68_RS05175 WP_279443725.1 1125065..1126444(+) (radA) [Actinobacillus equuli subsp. haemolyticus strain 4091]
MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKESSKNDRFSGYAGETSGKVQTLSEISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLSKMLPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEH
ICNIADQEKPKLMVIDSIQVMHLSDIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASL
LLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRSDELVSGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVIFGEVG
LAGEIRPVPSGQERISEAAKHGFKRAIVPFSNMPKKPIKDMEVIGVKKLSDALDALGNL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=725361 NYR68_RS05175 WP_279443725.1 1125065..1126444(+) (radA) [Actinobacillus equuli subsp. haemolyticus strain 4091]
ATGGCAAAAGCACCGAAAACGGCTTACGTATGTAATGATTGCGGCGCAGAATATTCTCGCTGGATGGGACAATGCAAAGA
GTGCAAAGCATGGAATACGATTAGTGAAGTTCGCTTAATCTCTAGTAAAGAATCAAGCAAAAATGACCGCTTCAGCGGTT
ATGCCGGAGAAACATCAGGCAAGGTACAAACACTTTCCGAAATCAGCTTACAAGAAGTGCCTCGTTTTAGTAGTGGGTTT
AATGAGCTTGATCGTGTACTCGGCGGTGGCGTGGTTCCCGGTTCTGCTATTCTTATCGGGGGACATCCTGGTGCAGGAAA
ATCGACACTATTACTGCAAGTGATGTGCGGCTTATCAAAAATGCTACCGACACTCTATGTCACCGGTGAAGAATCATTAC
AACAGGTTGCAATGCGTGCTAATCGTTTAGGGCTACCAACTGATAATCTGAAAATGCTTTCGGAAACATCTGTCGAACAT
ATTTGCAATATTGCCGACCAAGAAAAACCTAAATTAATGGTAATTGACTCTATTCAAGTGATGCATTTATCCGATATTCA
ATCCTCGCCGGGTTCTGTTGCTCAAGTACGAGAATGTGCATCATTTCTTACCCGCTATGCCAAAACACGCCAAGTGGCAA
TTATTATGGTCGGTCACGTCACCAAAGACGGTACGCTTGCCGGCCCAAAAGTGTTGGAACACGCTATTGATGCCTCATTA
TTGCTAGAAGGTGAATCTGATTCACGTTTCAGAACATTACGAAGCCAAAAAAACCGATTCGGCGCGGTAAATGAACTTGG
TGTGTTTGCTATGACTGAACAAGGTCTACGAGAAGTTAAAAATCCATCCGCTATTTTTTTAAGCCGTAGTGATGAATTGG
TTTCAGGCAGTTCTGTTATGGTTCTTTGGGAAGGGACTCGTCCGTTATTAGTTGAAATTCAAGCGCTTGTTGATCATTCA
ATGCTTGCAAATCCACGTCGTGTGGCTGTCGGTTTAGATCATAATCGCTTATCGCTCTTACTTGCTGTACTCCACCGCCA
TGGTGGGCTACAAATGTCTGACCAAGATGTTTTTGTTAACGTTGTCGGGGGCGTAAAAGTAACGGAAACCAGTGCTGATC
TCGCTTTAATTTTGGCACTGATATCAAGTTTTAGAAATCGTCCATTACCACAGGACTTAGTAATTTTTGGTGAAGTAGGG
CTTGCCGGCGAAATTCGTCCGGTGCCGAGTGGTCAAGAACGTATTAGCGAAGCGGCAAAACACGGTTTTAAACGTGCAAT
CGTGCCGTTTAGCAATATGCCGAAAAAACCGATAAAAGATATGGAAGTGATTGGGGTTAAAAAATTAAGTGATGCGCTAG
ATGCACTTGGTAATTTATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-224)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

99.564

0.488
  radA Streptococcus mitis NCTC 12261

44.835

99.129

0.444
  radA Streptococcus pneumoniae Rx1

44.615

99.129

0.442
  radA Streptococcus pneumoniae D39

44.615

99.129

0.442
  radA Streptococcus pneumoniae R6

44.615

99.129

0.442
  radA Streptococcus pneumoniae TIGR4

44.615

99.129

0.442
  radA Streptococcus mitis SK321

44.615

99.129

0.442