Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NYR68_RS05160 Genome accession   NZ_CP103814
Coordinates   1121855..1123048 (-) Length   397 a.a.
NCBI ID   WP_279454529.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 4091     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1116855..1128048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR68_RS05130 (NYR68_05135) lptE 1118647..1119141 (+) 495 WP_278225775.1 LPS assembly lipoprotein LptE -
  NYR68_RS05135 (NYR68_05140) - 1119146..1119292 (-) 147 WP_278225056.1 hypothetical protein -
  NYR68_RS05140 (NYR68_05145) holA 1119249..1120274 (+) 1026 WP_279622773.1 DNA polymerase III subunit delta -
  NYR68_RS05145 (NYR68_05150) yacG 1120351..1120539 (-) 189 WP_005623139.1 DNA gyrase inhibitor YacG -
  NYR68_RS05150 (NYR68_05155) coaE 1120521..1121159 (-) 639 WP_279441162.1 dephospho-CoA kinase -
  NYR68_RS05155 (NYR68_05160) - 1121181..1121855 (-) 675 WP_039197142.1 fimbrial protein -
  NYR68_RS05160 (NYR68_05165) pilC 1121855..1123048 (-) 1194 WP_279454529.1 type II secretion system F family protein Machinery gene
  NYR68_RS05165 (NYR68_05170) pilB 1123041..1124426 (-) 1386 WP_279437884.1 GspE/PulE family protein Machinery gene
  NYR68_RS05170 (NYR68_05175) pilA 1124447..1124884 (-) 438 WP_279622774.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR68_RS05175 (NYR68_05180) radA 1125065..1126444 (+) 1380 WP_279443725.1 DNA repair protein RadA Machinery gene
  NYR68_RS05180 (NYR68_05185) pepB 1126510..1127796 (+) 1287 WP_279622822.1 aminopeptidase PepB -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 44864.37 Da        Isoelectric Point: 9.6289

>NTDB_id=725358 NYR68_RS05160 WP_279454529.1 1121855..1123048(-) (pilC) [Actinobacillus equuli subsp. haemolyticus strain 4091]
MVSIFEFHWKAKNRFQQKQSGILLAQNHAEAEQKLLAKGYQDIRIQRNFAFARQPKADETTQFIAQLALLINASIPFKQA
LMMQQENCTNIKLYQWLLALNAAVTSGYSFSASLAKLGCYFSKQEIQLIRIGEQSGKLGTVLDNLAKTRSQSEKLTKKVR
KIMFYPLIVLVISCVLTLGLLVFIVPQFADLYMDKAQNLPWLTSLLFSLSAFLRQNGIFLCCSGIVAMGMLLCFAKKFGN
LTACQMRLLSYIPFFNQVIRYTRIIFFTQNLALMLSAHLHLEVALNAFLSEKMHDRLLQQQVQLTLSLLKQGYKFSEGLN
PAVFTSQVVQMIAIGEKSANLAVMCTQISDIYQLKLDYQIDLLSQLLEPILMLLMGIIIGTVLIGLYLPIFDLGVLV

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=725358 NYR68_RS05160 WP_279454529.1 1121855..1123048(-) (pilC) [Actinobacillus equuli subsp. haemolyticus strain 4091]
ATGGTTAGTATTTTTGAATTTCACTGGAAAGCGAAGAATCGGTTCCAACAAAAACAAAGCGGTATTTTATTAGCCCAAAA
TCATGCTGAGGCAGAGCAAAAGCTCTTGGCAAAAGGCTATCAAGATATTCGTATTCAACGCAATTTTGCTTTTGCTCGAC
AGCCTAAAGCAGATGAAACTACTCAATTTATTGCGCAATTAGCATTATTGATTAACGCTTCCATTCCTTTTAAACAAGCG
TTAATGATGCAGCAGGAAAATTGTACGAATATTAAATTATATCAGTGGCTACTTGCTTTGAATGCTGCTGTGACATCCGG
ATATAGTTTTTCTGCAAGTTTAGCGAAATTAGGGTGTTATTTTTCTAAGCAAGAAATCCAATTAATTCGTATTGGTGAAC
AAAGTGGTAAATTAGGTACTGTTTTGGATAATCTTGCTAAAACACGTAGCCAGTCCGAAAAATTAACGAAAAAAGTTAGA
AAAATTATGTTTTATCCGCTGATTGTGTTAGTCATTTCATGTGTATTGACTCTAGGGCTGTTAGTATTCATTGTGCCTCA
ATTTGCCGACTTATATATGGATAAAGCACAAAATTTACCATGGCTAACGTCATTATTGTTTTCTCTCTCTGCGTTTCTAC
GACAAAATGGGATATTCCTATGCTGTAGCGGTATAGTAGCGATGGGGATGTTGCTCTGTTTTGCAAAAAAATTCGGAAAT
TTGACCGCTTGTCAGATGCGTCTTTTGTCTTATATTCCCTTCTTTAATCAAGTTATTCGCTATACACGAATTATATTCTT
TACTCAGAATTTGGCGTTAATGTTAAGTGCCCATCTGCATTTAGAGGTTGCCCTAAACGCTTTTTTATCTGAGAAAATGC
ACGATCGACTTTTACAACAACAAGTACAGCTTACGTTATCTTTATTAAAACAGGGGTATAAATTTTCGGAAGGATTAAAC
CCGGCTGTATTCACTTCGCAAGTAGTACAAATGATAGCAATAGGGGAGAAAAGTGCTAATTTAGCGGTGATGTGTACGCA
GATTAGCGATATTTATCAGCTGAAATTAGATTATCAAATAGATTTGCTTTCACAATTACTTGAGCCGATTTTAATGCTAC
TTATGGGGATTATTATTGGCACGGTTTTAATTGGGCTTTATTTGCCGATTTTTGACTTAGGGGTTCTCGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-186)

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

48.111

100

0.481
  pilC Haemophilus influenzae Rd KW20

38.75

100

0.39
  pilC Haemophilus influenzae 86-028NP

38.5

100

0.388